CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra013222.1-P	Field mustard	plasma membrane	99.03	99.03
CDY52286	Canola	plasma membrane	92.43	92.25
CDY15100	Canola	plasma membrane	96.31	84.93
AT3G25260.1	Thale cress	plasma membrane	79.61	79.61
CDY04575	Canola	plasma membrane	64.66	64.29
CDY15763	Canola	plasma membrane	60.58	63.8
CDY40277	Canola	plasma membrane	20.0	40.39
CDY40278	Canola	plasma membrane	41.55	36.64
CDY28437	Canola	plasma membrane	41.55	36.64
CDY11649	Canola	cytosol, peroxisome, plasma membrane	42.33	36.64
CDY00323	Canola	plasma membrane	40.0	36.52
CDX84348	Canola	plasma membrane	39.81	36.35
CDY38765	Canola	plasma membrane	42.33	33.54
CDY69100	Canola	plasma membrane	20.78	32.23
CDY30051	Canola	cytosol, peroxisome, plasma membrane	21.55	31.81
CDY50182	Canola	plasma membrane	36.12	31.63
CDX93764	Canola	plasma membrane	36.5	31.33
CDY65523	Canola	plastid	19.61	31.17
CDY21035	Canola	plasma membrane	34.76	31.13
CDY45147	Canola	mitochondrion	20.0	31.02
CDY31242	Canola	plasma membrane	34.56	30.96
CDY15967	Canola	plasma membrane	33.98	30.49
CDY26539	Canola	plasma membrane	33.98	30.49
CDY45207	Canola	golgi, plasma membrane	34.37	30.15
CDY70795	Canola	plasma membrane	18.45	30.06
CDY30787	Canola	mitochondrion	34.95	29.95
CDX71495	Canola	plasma membrane	34.76	29.83
CDY45893	Canola	golgi, peroxisome, plasma membrane	26.8	28.93
CDY67653	Canola	peroxisome	19.61	27.82
CDY44319	Canola	plasma membrane	24.47	26.75
CDY38629	Canola	plasma membrane	24.47	26.3
CDX91126	Canola	plastid	31.26	25.88
CDX85654	Canola	cytosol, plasma membrane, plastid	31.07	25.72

Protein Annotations

Gene3D:1.20.1250.20	MapMan:11.1.4.1	MapMan:24.2.2.9	GO:A0A078IS45	UniProt:A0A078IS45	EnsemblPlants:CDY52284
ProteinID:CDY52284	ProteinID:CDY52284.1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0022857	GO:GO:0055085	EnsemblPlantsGene:GSBRNA2T00006691001
InterPro:IPR020846	InterPro:MFS_dom	InterPro:MFS_trans_sf	PFAM:PF00854	InterPro:POT_fam	PANTHER:PTHR11654
PANTHER:PTHR11654:SF165	SUPFAM:SSF103473	TMHMM:TMhelix	UniParc:UPI0004EEE87C	SEG:seg	:

Description

BnaA03g57770DBnaA03g57770D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IS45]

Coordinates

chrLK033075:+:25089..27234

Molecular Weight (calculated)

57223.5 Da

IEP (calculated)

9.141

GRAVY (calculated)

0.303

Length

515 amino acids

Sequence
(BLAST)

001: MQNEMEEKFE DWRGKEAIPG KHGGIRAASI ACVVEIMENM VFLACSTNFI TYFTKSWHYS SAKASNMVTN FTGTSFLLTI IGGFVADSFL TRFTAFVIFC
101: SIELLGLILL TIQAHSPKLQ PHGENTPSTL PSLVLFTGLY AVATGVGGVK ASLPAHGGDQ LDSRKQGLIS GFFSWYFFSI CFGGLLAVTI MVWTEENKGW
201: SSSFDICTVI LASALFIFTV GFPMYRFRRP TGSPLTRIVN VFVSAARNRN RFVTDAEITL NNSTDKSIHH NKFKFLNKAK LNNKISATEV EETRTFLALL
301: PIFASTIVMN CCLAQLSTYS VQQGMLMNRK LSKSFELPPA SLNTIALLFM LSSIAFYELF GKRISSSNNE RSSSFNLKRI GTGLALTSVA MAIAAIVEAK
401: RKHEAVHNNI KISVFWLEFQ YVLLSFSDVL TLGGMLEFFY RESPASMKSI STALGWFSTA LGFFLSTVLV DVTKSVTGWL DGEDVNGSRL ELFYAVLCVL
501: NTLNLFNYIF WAKRY

Best Arabidopsis Sequence Match ( AT3G25260.1 )
(BLAST)

001: MQIEMEEKFE DWRGKEAISG KHGGIKAAFI ACVVETMENM VFLACSTNFM MYFTKSMNYS TPKAATMVTN FVGTSFLLTI FGGFVADSFL TRFAAFVLFG
101: SIELLGLIML TLQAHITKLQ PQGGKKPSTP QSTVLFTGLY AIAIGVGGVK GSLPAHGGDQ IGTRNQRLIS GFFNWYFFSV CLGGFLAVTL MVWIEENIGW
201: SSSFTISTAV LASAIFVFVA GCPMYRFKRP AGSPLTRIVN VFVSAARNRN RFVTDAEVVT QNHNSTDKSI HHNKFKFLNK AKLNNKISAT QVEETRTFLA
301: LLPIFGSTII MNCCVAQMGT FSVQQGMVTN RKLSRSFEIP VASLNAIPLL CMLSSLALYE LFGKRILSNS ERSSSFNLKR IGYGLALTSI SMAVAAIVEV
401: KRKHEAVHNN IKISVFWLEL QFVMLSLSDM LTVGGMLEFF FRESPASMRS MSTALGWCST AMGFFLSSVL VEVVNGITGW LRDDLNESRL ELFYLVLCVL
501: NTLNLFNYIF WAKRY

Arabidopsis Description

NPF4.1Protein NRT1/ PTR FAMILY 4.1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSF0]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.