CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 1
nucleus 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 3
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, plasma membrane
BaCelLo:	cytosol
MultiLoc:	nucleus
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY45207	Canola	golgi, plasma membrane	96.83	98.98
CDY30787	Canola	mitochondrion	96.33	96.17
AT2G26690.1	Thale cress	plasma membrane	88.0	91.51
Solyc07g032490.2.1	Tomato	plasma membrane	72.17	76.1
PGSC0003DMT400075163	Potato	plasma membrane	73.17	75.69
KRH20280	Soybean	plasma membrane	72.5	74.87
VIT_11s0016g05170.t01	Wine grape	plasma membrane	71.67	74.65
Solyc01g096880.2.1	Tomato	plasma membrane	70.83	74.04
KRH03705	Soybean	plasma membrane	72.0	73.85
PGSC0003DMT400070732	Potato	plasma membrane	70.33	73.39
GSMUA_Achr6P05170_001	Banana	plasma membrane	64.33	66.67
Zm00001d044529_P001	Maize	cytosol, peroxisome, plasma membrane	62.5	63.45
TraesCS1D01G032700.1	Wheat	peroxisome	61.5	63.4
TraesCS1B01G038700.1	Wheat	peroxisome	61.5	63.4
HORVU1Hr1G004720.4	Barley	plasma membrane	60.83	63.26
TraesCS1A01G031300.1	Wheat	peroxisome	61.33	63.23
KXG32694	Sorghum	cytosol	61.67	63.03
Zm00001d009399_P001	Maize	cytosol, peroxisome, plasma membrane	61.0	61.93
GSMUA_Achr7P08300_001	Banana	plasma membrane	68.0	60.62
GSMUA_Achr4P30700_001	Banana	plasma membrane	64.67	56.48
CDY30051	Canola	cytosol, peroxisome, plasma membrane	31.83	54.73
CDY21035	Canola	plasma membrane	50.0	52.17
CDY31242	Canola	plasma membrane	49.83	52.0
CDY26539	Canola	plasma membrane	49.33	51.57
CDY69100	Canola	plasma membrane	28.5	51.51
CDY15967	Canola	plasma membrane	49.17	51.39
CDY44319	Canola	plasma membrane	36.0	45.86
CDY38629	Canola	plasma membrane	36.0	45.09
CDY40277	Canola	plasma membrane	16.67	39.22
CDY40278	Canola	plasma membrane	35.67	36.64
CDY65523	Canola	plastid	19.67	36.42
CDY28437	Canola	plasma membrane	35.33	36.3
CDY50182	Canola	plasma membrane	35.33	36.05
CDX93764	Canola	plasma membrane	36.0	36.0
CDY11649	Canola	cytosol, peroxisome, plasma membrane	35.5	35.8
CDY45147	Canola	mitochondrion	19.67	35.54
CDY00323	Canola	plasma membrane	32.83	34.93
CDY52284	Canola	plasma membrane	29.83	34.76
CDX84348	Canola	plasma membrane	32.67	34.75
CDY52286	Canola	plasma membrane	29.33	34.11
CDY04575	Canola	plasma membrane	29.17	33.78
CDY45893	Canola	golgi, peroxisome, plasma membrane	26.83	33.75
CDY15763	Canola	plasma membrane	27.33	33.54
CDX85654	Canola	cytosol, plasma membrane, plastid	34.5	33.28
CDY70795	Canola	plasma membrane	17.5	33.23
CDX91126	Canola	plastid	34.33	33.12
CDY38765	Canola	plasma membrane	35.33	32.62
CDY15100	Canola	plasma membrane	30.17	30.99
CDY67653	Canola	peroxisome	18.33	30.3

Protein Annotations

MapMan:24.2.2.9	GO:A0A078C3T0	EnsemblPlants:CDX71495	ProteinID:CDX71495	ProteinID:CDX71495.1	GO:GO:0003674
GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0006857	GO:GO:0008150	GO:GO:0016020
GO:GO:0022857	GO:GO:0055085	EnsemblPlantsGene:GSBRNA2T00148400001	InterPro:MFS_trans_sf	PFAM:PF00854	InterPro:POT_fam
ScanProsite:PS01022	PANTHER:PTHR11654	PANTHER:PTHR11654:SF85	InterPro:PTR2_symporter_CS	SUPFAM:SSF103473	TMHMM:TMhelix
UniParc:UPI0004EE1A98	SEG:seg	:	:	:	:

Description

BnaC04g17300D

Coordinates

chrLK031793:+:1689623..1695307

Molecular Weight (calculated)

66356.5 Da

IEP (calculated)

9.882

GRAVY (calculated)

0.264

Length

600 amino acids

Sequence
(BLAST)

001: MRRKRKREKG KDGYSHQGIT RRKMESKGSW TVADAVDYNG LPADKSKTGG WITAALILGI EVVERLSTMG IAVNLVTYLM ETMHLPSSNS ANIVTDFMGT
101: SFLLCLLGGF LADSFLGRFK TIAIFSTIQA LGTGALAVAT KLPQLRPPTC HHGEACTPAT AFQMTFLYIA LYLIALGTGG LKSSISGFGS DQFDDKDPKE
201: KAQMAFFFNR FFFIISMGTL MAVTVLVYIQ DEVGRSWAYG ICTVSMAIAI AVFLSGTKSY RYKKSQGSPI VQIFQIIAAS IRKRKTELPQ SIVYLYEDTP
301: EGLRIEHTDQ FRMLDKAAVV TEGDFEQTLD GIAIPNPWKL SSVTKVEEVK MMVRLLPIWA TTIIFWTTYA QMITFSVEQA STMRRNVGNF QIPAGSLTVF
401: FVAAILITLA FYDRVIMPFW KKWKGKPGFS SLQRMAIGLV LSTVGMAAAA IVEQKRLSVA KSSTQKTLPI SVFLLVPQFF LVGSGEAFIY TGQLDFFITQ
501: SPKGMKTMST GLFLTTLSLG FFVSSFLVSI VKKVTATSVN GGWLADNINH GRLDLFYWLL VILSGINFVV YLICALWFKP TKGKDSEEME KGKGFSVEDC

Best Arabidopsis Sequence Match ( AT2G26690.1 )
(BLAST)

001: MESKGSWTVA DAVDYKGRPA DKSKTGGWIT AALILGIEVV ERLSTMGIAV NLVTYLMETM HLPSSTSANI VTDFMGTSFL LCLLGGFLAD SFLGRFKTIG
101: IFSTIQALGT GALAVATKLP ELRPPTCHHG EACIPATAFQ MTILYVSLYL IALGTGGLKS SISGFGSDQF DDKDPKEKAH MAFFFNRFFF FISMGTLLAV
201: TVLVYMQDEV GRSWAYGICT VSMAIAIVIF LCGTKRYRYK KSQGSPVVQI FQVIAAAFRK RKMELPQSIV YLYEDNPEGI RIEHTDQFHL LDKAAIVAEG
301: DFEQTLDGVA IPNPWKLSSV TKVEEVKMMV RLLPIWATTI IFWTTYAQMI TFSVEQASTM RRNIGSFKIP AGSLTVFFVA AILITLAVYD RAIMPFWKKW
401: KGKPGFSSLQ RIAIGLVLST AGMAAAALVE QKRLSVAKSS SQKTLPISVF LLVPQFFLVG AGEAFIYTGQ LDFFITQSPK GMKTMSTGLF LTTLSLGFFV
501: SSFLVSIVKR VTSTSTDVGW LADNINHGRL DYFYWLLVIL SGINFVVYII CALWFKPTKG KDSVEKENGK GFSVEDC

Arabidopsis Description

NPF6.2Protein NRT1/ PTR FAMILY 6.2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZY4]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.