Factsheet for PGSC0003DMT400070732

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 1
plastid 1
mitochondrion 1
peroxisome 1
vacuole 2
extracellular 1
endoplasmic reticulum 1
plasma membrane 3
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	plastid
iPSORT:	mitochondrion
MultiLoc:	peroxisome
Plant-mPloc:	vacuole
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g096880.2.1	Tomato	plasma membrane	97.22	97.39
PGSC0003DMT400075163	Potato	plasma membrane	80.0	79.31
VIT_11s0016g05170.t01	Wine grape	plasma membrane	75.83	75.69
AT2G26690.1	Thale cress	plasma membrane	74.26	74.0
KRH20280	Soybean	plasma membrane	73.91	73.15
KRH03705	Soybean	plasma membrane	73.57	72.31
Bra012052.1-P	Field mustard	plasma membrane	64.7	71.4
CDY45207	Canola	golgi, plasma membrane	72.87	71.38
CDX71495	Canola	plasma membrane	73.39	70.33
CDY30787	Canola	mitochondrion	72.7	69.55
GSMUA_Achr6P05170_001	Banana	plasma membrane	69.57	69.08
HORVU1Hr1G004720.4	Barley	plasma membrane	64.87	64.64
PGSC0003DMT400053569	Potato	endoplasmic reticulum, plasma membrane	29.74	64.29
TraesCS1A01G031300.1	Wheat	peroxisome	65.04	64.26
TraesCS1B01G038700.1	Wheat	peroxisome	64.87	64.09
TraesCS1D01G032700.1	Wheat	peroxisome	64.7	63.92
KXG32694	Sorghum	cytosol	64.87	63.54
Zm00001d044529_P001	Maize	cytosol, peroxisome, plasma membrane	65.22	63.45
GSMUA_Achr7P08300_001	Banana	plasma membrane	73.39	62.7
Zm00001d009399_P001	Maize	cytosol, peroxisome, plasma membrane	63.3	61.59
GSMUA_Achr4P30700_001	Banana	plasma membrane	70.96	59.39
PGSC0003DMT400012226	Potato	cytosol, peroxisome, plasma membrane	55.48	54.07
PGSC0003DMT400032493	Potato	cytosol, peroxisome, plasma membrane	54.78	53.39
PGSC0003DMT400035882	Potato	plasma membrane	53.39	51.86
PGSC0003DMT400010957	Potato	cytosol, peroxisome, plasma membrane	50.61	49.16
PGSC0003DMT400001784	Potato	cytosol, peroxisome, plasma membrane	50.09	48.57
PGSC0003DMT400030533	Potato	plasma membrane	38.26	37.8
PGSC0003DMT400045415	Potato	plasma membrane	37.57	37.57
PGSC0003DMT400053373	Potato	cytosol, peroxisome, plasma membrane	38.09	36.2
PGSC0003DMT400007441	Potato	plasma membrane	36.7	36.13
PGSC0003DMT400030534	Potato	plasma membrane	36.52	35.9
PGSC0003DMT400030530	Potato	mitochondrion	21.57	35.33
PGSC0003DMT400045412	Potato	mitochondrion	37.39	34.29
PGSC0003DMT400082762	Potato	plasma membrane	26.78	34.07
PGSC0003DMT400065182	Potato	plasma membrane	34.09	33.28
PGSC0003DMT400072037	Potato	cytosol, peroxisome, plasma membrane	36.17	31.85
PGSC0003DMT400011063	Potato	cytosol	32.17	31.73
PGSC0003DMT400046950	Potato	plasma membrane	32.87	30.93
PGSC0003DMT400071504	Potato	plasma membrane	31.3	30.15
PGSC0003DMT400054593	Potato	plasma membrane	31.3	29.32

Protein Annotations

Gene3D:1.20.1250.20	EntrezGene:102598158	MapMan:24.2.2.9	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0006810	GO:GO:0006857	GO:GO:0006950	GO:GO:0008150	GO:GO:0009611	GO:GO:0009719
GO:GO:0009753	GO:GO:0016020	GO:GO:0016021	GO:GO:0022857	GO:GO:0055085	UniProt:M1CML8
InterPro:MFS_trans_sf	PFAM:PF00854	EnsemblPlantsGene:PGSC0003DMG402027501	PGSC:PGSC0003DMG402027501	EnsemblPlants:PGSC0003DMT400070732	InterPro:POT_fam
ScanProsite:PS01022	PANTHER:PTHR11654	PANTHER:PTHR11654:SF85	InterPro:PTR2_symporter_CS	SUPFAM:SSF103473	TMHMM:TMhelix
UniParc:UPI0002960D73	RefSeq:XP_006347704.1	SEG:seg	:	:	:

Description

Oligopeptide transporter [Source:PGSC_GENE;Acc:PGSC0003DMG402027501]

Coordinates

chr1:-:74630384..74633515

Molecular Weight (calculated)

63516.3 Da

IEP (calculated)

9.271

GRAVY (calculated)

0.350

Length

575 amino acids

Sequence
(BLAST)

001: MSWTVADAVN YKGLPADRTK TGGWMPAALV LGIEINERLS TMGIAVNLVT YLGGTMHLPS AASANIVTDF MGTAFLLSLL GGFLADSFLG RYKTIAIFAL
101: IQALGTGMLT VTTGMPQLRP PTCHPHDKYC EPANGFQMGI LYLALYLIAL GTGGLKSSVS GFGTDQFDEK DEKEKSQMAY FFNRFFIFIS IGTLTAVTVL
201: VYVQDEVGRS WAYGICCISM VIAIIIFFAG TKRYRYKRSS GSPIVQIFQV ILAATRKRKM DVPYDVGMLY EMNPDGSRIQ HTDQFRCLDK AAIVAQGDFE
301: DHDLNPNPWK LCTVTRVEEV KMMARLIPIW ATTILFWTNY AQMITFSVEQ AATMERNVGK FKIPAGSLTV FFVSAILITL IIYDRFIMPL WQKLKGKPGF
401: TSLQKIAIGL VLSTMGMGIA ALVEMKRLSV AKSTGRNIST LPISVFYLIP QFFLVGAGEG FIYTGQLDFF ITQSPKGMKT MSTGLFLTTL ALGFFVSSFL
501: VSIIKKVTGS NGGHDWLADN INYGRLDCFY GLLAILGVIN FVLYLFCATW FKPRKAKSAI NMETINNGNV VEDKC

Best Arabidopsis Sequence Match ( AT2G26690.1 )
(BLAST)

001: MESKGSWTVA DAVDYKGRPA DKSKTGGWIT AALILGIEVV ERLSTMGIAV NLVTYLMETM HLPSSTSANI VTDFMGTSFL LCLLGGFLAD SFLGRFKTIG
101: IFSTIQALGT GALAVATKLP ELRPPTCHHG EACIPATAFQ MTILYVSLYL IALGTGGLKS SISGFGSDQF DDKDPKEKAH MAFFFNRFFF FISMGTLLAV
201: TVLVYMQDEV GRSWAYGICT VSMAIAIVIF LCGTKRYRYK KSQGSPVVQI FQVIAAAFRK RKMELPQSIV YLYEDNPEGI RIEHTDQFHL LDKAAIVAEG
301: DFEQTLDGVA IPNPWKLSSV TKVEEVKMMV RLLPIWATTI IFWTTYAQMI TFSVEQASTM RRNIGSFKIP AGSLTVFFVA AILITLAVYD RAIMPFWKKW
401: KGKPGFSSLQ RIAIGLVLST AGMAAAALVE QKRLSVAKSS SQKTLPISVF LLVPQFFLVG AGEAFIYTGQ LDFFITQSPK GMKTMSTGLF LTTLSLGFFV
501: SSFLVSIVKR VTSTSTDVGW LADNINHGRL DYFYWLLVIL SGINFVVYII CALWFKPTKG KDSVEKENGK GFSVEDC

Arabidopsis Description

NPF6.2Protein NRT1/ PTR FAMILY 6.2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZY4]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.