Factsheet for PGSC0003DMT400072037

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
plasma membrane 3
vacuole 2
extracellular 1
endoplasmic reticulum 1
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plasma membrane
Any Predictor:	cytosol, nucleus, peroxisome, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane, vacuole
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_01s0150g00250.t01	Wine grape	cytosol, peroxisome, plasma membrane	80.4	82.03
CDX85654	Canola	cytosol, plasma membrane, plastid	74.89	78.62
KRH01794	Soybean	cytosol, peroxisome, plasma membrane	75.96	78.61
Bra023408.1-P	Field mustard	plastid	74.73	78.46
CDX91126	Canola	plastid	74.43	78.14
AT5G13400.1	Thale cress	plasma membrane	73.35	76.76
GSMUA_Achr9P01100_001	Banana	cytosol, peroxisome, plasma membrane	68.45	75.13
EES00465	Sorghum	plastid	69.22	67.77
Zm00001d040201_P001	Maize	plasma membrane	67.69	66.87
TraesCS3D01G081100.1	Wheat	cytosol, peroxisome, plasma membrane, plastid	66.16	66.06
HORVU3Hr1G014510.3	Barley	plastid	65.85	65.95
TraesCS3B01G095900.1	Wheat	cytosol, peroxisome, plasma membrane, plastid	65.39	65.69
TraesCS3A01G081100.3	Wheat	cytosol, peroxisome, plasma membrane, plastid	62.94	65.34
Os01t0103100-01	Rice	plasma membrane	59.11	63.7
EES19057	Sorghum	plastid	23.12	60.4
PGSC0003DMT400010957	Potato	cytosol, peroxisome, plasma membrane	33.84	37.33
PGSC0003DMT400012226	Potato	cytosol, peroxisome, plasma membrane	32.92	36.44
PGSC0003DMT400070732	Potato	plasma membrane	31.85	36.17
PGSC0003DMT400001784	Potato	cytosol, peroxisome, plasma membrane	32.31	35.58
PGSC0003DMT400053569	Potato	endoplasmic reticulum, plasma membrane	14.24	34.96
PGSC0003DMT400032493	Potato	cytosol, peroxisome, plasma membrane	31.55	34.92
PGSC0003DMT400075163	Potato	plasma membrane	30.93	34.83
PGSC0003DMT400045415	Potato	plasma membrane	29.86	33.91
PGSC0003DMT400035882	Potato	plasma membrane	30.47	33.61
PGSC0003DMT400007441	Potato	plasma membrane	29.71	33.22
PGSC0003DMT400030533	Potato	plasma membrane	29.25	32.82
PGSC0003DMT400030530	Potato	mitochondrion	17.61	32.76
PGSC0003DMT400082762	Potato	plasma membrane	22.51	32.52
PGSC0003DMT400011063	Potato	cytosol	28.48	31.9
PGSC0003DMT400053373	Potato	cytosol, peroxisome, plasma membrane	29.25	31.57
PGSC0003DMT400030534	Potato	plasma membrane	28.02	31.28
PGSC0003DMT400054593	Potato	plasma membrane	29.4	31.27
PGSC0003DMT400045412	Potato	mitochondrion	29.86	31.1
PGSC0003DMT400065182	Potato	plasma membrane	28.02	31.07
PGSC0003DMT400046950	Potato	plasma membrane	28.48	30.44
PGSC0003DMT400071504	Potato	plasma membrane	25.11	27.47

Protein Annotations

EntrezGene:102590731	MapMan:24.2.2.9	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810
GO:GO:0006857	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0022857	GO:GO:0055085
InterPro:IPR020846	UniProt:M1CPM1	InterPro:MFS_dom	InterPro:MFS_trans_sf	PFAM:PF00854	EnsemblPlantsGene:PGSC0003DMG400028026
PGSC:PGSC0003DMG400028026	EnsemblPlants:PGSC0003DMT400072037	InterPro:POT_fam	ScanProsite:PS01022	PANTHER:PTHR11654	PANTHER:PTHR11654:SF112
InterPro:PTR2_symporter_CS	SUPFAM:SSF103473	TMHMM:TMhelix	UniParc:UPI0002956235	RefSeq:XP_006343500.1	RefSeq:XP_015162479.1
SEG:seg	:	:	:	:	:

Description

Proton-dependent oligopeptide transport family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400028026]

Coordinates

chr11:-:19452106..19456164

Molecular Weight (calculated)

71902.2 Da

IEP (calculated)

9.049

GRAVY (calculated)

0.170

Length

653 amino acids

Sequence
(BLAST)

001: MGSKEREIKS PEVQLGGNST PKRGSKKLGI YFLESDDRRT AFGRGYSGGV GGATPVNIHG KPIPDINKTG GWIAALFIFG NEMAERMAYF GLSVNMVAFM
101: FYVMHRPFSS SANAVNNFLG ISQASSVLGG FVADAYLGRY WTIAIFTTIY LAGLTGITLL ATIKVFVPNQ DQCDQIALLL GNCEPAKSWQ MMYLYTVLYV
201: TGFGAAGIRP CVSSFGADQF DERSRNYRSH LDRFFNFFYL SVTVGAIVAF TAVVYIQMKH GWGAAFGSLA IAMGLSNMLF FAGTPMYRHR LPGGSPLTRV
301: AQVLVAAFRK RNVSFQSSEL VGLYELPGKR SAIKGSNKIP HTDDFRCLDK AALQLKDDDG ANPWRLCTVT QVEEVKILLK LLPIPACTIM LSVVLTEYLT
401: LSVQQAYTLN THMGHLKLPV TCMPVFPGLS IFVLLSLYYS VFVPISRRIT GNPHGASQLQ RVGIGLAVSI LSVAWAGVFE RYRRTYAIQH GYEASFLTQM
501: PDLSAYWLLI QYCLIGIAEV FCIVGLLEFL YEEAPDAMRS IGSAYAAVAG GLGCFAATIL NSIIKSVTRG KGETRESWLS QNINTGRFDY FYCLLTVMSL
601: INFAAFLYAA HCYQYRSKDG TDRQSEKAPG SDHTSTNTPD PIRTPQLSVF GRE

Best Arabidopsis Sequence Match ( AT5G13400.1 )
(BLAST)

001: MVASEIKSPV SVPETPGSSS VHHRKQLSVF FIESDNRRLA LGRGYTGGTT PVNIHGKPIA NLSKTGGWIA AFFIFGNEMA ERMAYFGLSV NMVAFMFYVM
101: HRPFESSSNA VNNFLGISQA SSVLGGFLAD AYLGRYWTIA IFTTMYLVGL IGITLGASLK MFVPDQSNCG QLSLLLGNCE EAKSWQMLYL YTVLYITGFG
201: AAGIRPCVSS FGADQFDEKS KDYKTHLDRF FNFFYLSVTL GAIIAFTLVV YVQMELGWGM AFGTLAVAMG ISNALFFAGT PLYRHRLPGG SPLTRVAQVL
301: VAAFRKRNAA FTSSEFIGLY EVPGLKSAIN GSRKIPHSND FIWLDKAALE LKEDGLEPSP WKLCTVTQVE EVKILIRLIP IPTCTIMLSL VLTEYLTLSV
401: QQAYTLNTHI QHLKLPVTCM PVFPGLSIFL ILSLYYSVFV PITRRITGNP HGASQLQRVG IGLAVSIISV AWAGLFENYR RHYAIQNGFE FNFLTQMPDL
501: TAYWLLIQYC LIGIAEVFCI VGLLEFLYEE APDAMKSIGS AYAALAGGLG CFAATILNNI VKAATRDSDG KSWLSQNINT GRFDCLYWLL TLLSFLNFCV
601: FLWSAHRYKY RAIESEEDKS SAVL

Arabidopsis Description

NPF6.1Protein NRT1/ PTR FAMILY 6.1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LYR6]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.