CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
vacuole 2
cytosol 1
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d040201_P001	Maize	plasma membrane	93.85	94.7
EES19057	Sorghum	plastid	35.23	94.0
TraesCS3B01G095900.1	Wheat	cytosol, peroxisome, plasma membrane, plastid	78.11	80.15
TraesCS3D01G081100.1	Wheat	cytosol, peroxisome, plasma membrane, plastid	78.41	79.97
HORVU3Hr1G014510.3	Barley	plastid	78.11	79.91
TraesCS3A01G081100.3	Wheat	cytosol, peroxisome, plasma membrane, plastid	74.81	79.33
Os01t0103100-01	Rice	plasma membrane	67.32	74.09
CDX85654	Canola	cytosol, plasma membrane, plastid	68.22	73.15
Bra023408.1-P	Field mustard	plastid	68.07	72.99
CDX91126	Canola	plastid	68.07	72.99
VIT_01s0150g00250.t01	Wine grape	cytosol, peroxisome, plasma membrane	68.67	71.56
KRH01794	Soybean	cytosol, peroxisome, plasma membrane	67.62	71.47
AT5G13400.1	Thale cress	plasma membrane	66.72	71.31
GSMUA_Achr9P01100_001	Banana	cytosol, peroxisome, plasma membrane	62.52	70.08
PGSC0003DMT400072037	Potato	cytosol, peroxisome, plasma membrane	67.77	69.22
EER91957	Sorghum	plasma membrane	33.43	37.48
EES05323	Sorghum	plasma membrane	32.83	36.68
KXG32694	Sorghum	cytosol	31.33	35.6
EES13374	Sorghum	plasma membrane	31.78	35.27
OQU93471	Sorghum	plasma membrane	31.18	34.38
OQU81850	Sorghum	plasma membrane	27.44	33.27
KXG28299	Sorghum	plasma membrane	28.49	32.93
EES15876	Sorghum	plasma membrane	27.59	32.74
EES15875	Sorghum	plasma membrane	27.59	32.34
EES15877	Sorghum	plasma membrane	27.59	32.17
OQU87541	Sorghum	cytosol, peroxisome, plasma membrane	29.54	32.14
EER89980	Sorghum	plasma membrane	28.94	32.06
KXG24751	Sorghum	peroxisome, plasma membrane, vacuole	28.79	31.89
OQU81851	Sorghum	plasma membrane	26.84	31.79
EES12219	Sorghum	plasma membrane	27.74	31.41
KXG26617	Sorghum	plasma membrane	27.59	31.24
OQU83190	Sorghum	plasma membrane	26.39	31.1
OQU83318	Sorghum	mitochondrion, plasma membrane	23.39	30.41
EES14657	Sorghum	plasma membrane	25.49	29.82
EES11151	Sorghum	plasma membrane	25.79	29.55
EES12425	Sorghum	plasma membrane	21.74	26.65

Protein Annotations

Gene3D:1.20.1250.20	MapMan:24.2.2.9	EntrezGene:8063327	UniProt:C5XF28	EnsemblPlants:EES00465	ProteinID:EES00465
ProteinID:EES00465.2	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0006857
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0022857	GO:GO:0055085	InterPro:IPR020846
InterPro:MFS_dom	InterPro:MFS_trans_sf	ProteinID:OQU86565.1	PFAM:PF00854	InterPro:POT_fam	ScanProsite:PS01022
PANTHER:PTHR11654	PANTHER:PTHR11654:SF112	InterPro:PTR2_symporter_CS	EnsemblPlantsGene:SORBI_3003G107100	SUPFAM:SSF103473	unigene:Sbi.9116
TMHMM:TMhelix	UniParc:UPI0001A839F3	RefSeq:XP_002460589.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr3:-:9699620..9701750

Molecular Weight (calculated)

72342.0 Da

IEP (calculated)

8.764

GRAVY (calculated)

0.352

Length

667 amino acids

Sequence
(BLAST)

001: MAPASAMELE APPPASASAA AAKEIKSPEV LPEPSSLSAL QRKKLGAHFL ESDERRFSRG CRTPLGGGYD EPPSSAAGAG GTTPVNIRGE PIRDLSRTGG
101: WVAAFFIFGN EMAERMAYFG LSVNMVIFMF KVMHRPFTSS ANAVNNFLGI SQASSVLGGF LADAYLGRYW TIAIFTTMYL LGLIALTVSA SVPALVPTQE
201: GCDKLAMLLG ACAPAAPWQM AYLQTALYVT AFGAAGIRPC VSSFGADQFD ERSAGYKRRL DRFFNLFYLA VTLGAIAAFT AVVYIQMQHG WAAAFGTLAL
301: AMGASNALFF VGTPLYRHRL PGGSPLTRVA QVLVAAFRKR NAAFDSGDFV GLYEVAGAKS AIRGSAKIDH TDDFRWLDKA ALQLEGDLAG GGEEAVNPWR
401: LCTVTQVEEV KILLRLLPVP ACTVMLSVVL TEFLTLSVQQ AYTLNTRVAA LHLPVTCMPV FPCLAIFLIL ALYYQTFAPL ARRLTGHPHG ASQLQRVGLG
501: LFFSILSVAW AGLFERYRRG YAVRHGYLAL FLTPMPDLSA YWLLIQYCLI GVAEVFCLVA LLEFLYQEAP DAMRSVGSAY AAVAGGLGCF VASAINTAVD
601: AATRNDAEGR PSWLAQNINV GRFDYLYWLL AVLSTINLLV FVYFAKRYKY RVRVDTQQTT VVVNNKQ

Best Arabidopsis Sequence Match ( AT5G13400.1 )
(BLAST)

001: MVASEIKSPV SVPETPGSSS VHHRKQLSVF FIESDNRRLA LGRGYTGGTT PVNIHGKPIA NLSKTGGWIA AFFIFGNEMA ERMAYFGLSV NMVAFMFYVM
101: HRPFESSSNA VNNFLGISQA SSVLGGFLAD AYLGRYWTIA IFTTMYLVGL IGITLGASLK MFVPDQSNCG QLSLLLGNCE EAKSWQMLYL YTVLYITGFG
201: AAGIRPCVSS FGADQFDEKS KDYKTHLDRF FNFFYLSVTL GAIIAFTLVV YVQMELGWGM AFGTLAVAMG ISNALFFAGT PLYRHRLPGG SPLTRVAQVL
301: VAAFRKRNAA FTSSEFIGLY EVPGLKSAIN GSRKIPHSND FIWLDKAALE LKEDGLEPSP WKLCTVTQVE EVKILIRLIP IPTCTIMLSL VLTEYLTLSV
401: QQAYTLNTHI QHLKLPVTCM PVFPGLSIFL ILSLYYSVFV PITRRITGNP HGASQLQRVG IGLAVSIISV AWAGLFENYR RHYAIQNGFE FNFLTQMPDL
501: TAYWLLIQYC LIGIAEVFCI VGLLEFLYEE APDAMKSIGS AYAALAGGLG CFAATILNNI VKAATRDSDG KSWLSQNINT GRFDCLYWLL TLLSFLNFCV
601: FLWSAHRYKY RAIESEEDKS SAVL

Arabidopsis Description

NPF6.1Protein NRT1/ PTR FAMILY 6.1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LYR6]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.