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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome, vacuole, plasma membrane

Predictor Summary:
  • nucleus 1
  • vacuole 2
  • extracellular 1
  • endoplasmic reticulum 1
  • plasma membrane 2
  • golgi 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:peroxisome, plasma membrane, vacuole
Any Predictor:nucleus, peroxisome, plasma membrane, vacuole
BaCelLo:nucleus
MultiLoc:vacuole
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:peroxisome
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d049349_P001 Maize mitochondrion 88.37 74.2
EES12219 Sorghum plasma membrane 68.6 70.12
OQU83190 Sorghum plasma membrane 56.98 60.6
CDY65523 Canola plastid 30.4 56.48
KRH01875 Soybean plasma membrane 50.17 56.03
KRH51284 Soybean plasma membrane 52.33 55.56
AT1G59740.1 Thale cress plasma membrane 54.15 55.16
Bra035429.1-P Field mustard plasma membrane 53.32 54.04
CDY45147 Canola mitochondrion 29.73 53.92
PGSC0003DMT400053373 Potato cytosol, peroxisome, plasma membrane 54.15 53.88
Bra027836.1-P Field mustard plasma membrane 53.82 53.73
VIT_12s0035g01820.t01 Wine grape golgi, peroxisome, plasma membrane 54.32 53.61
KRH26263 Soybean cytosol, peroxisome, plasma membrane 54.32 53.43
Solyc01g103030.2.1 Tomato cytosol, peroxisome, plasma membrane 53.65 53.3
CDY45893 Canola golgi, peroxisome, plasma membrane 42.19 53.25
CDY70795 Canola plasma membrane 26.25 50.0
CDY67653 Canola peroxisome 29.07 48.21
HORVU2Hr1G076880.23 Barley golgi, peroxisome 39.37 40.37
OQU81850 Sorghum plasma membrane 34.05 37.27
EES15876 Sorghum plasma membrane 34.72 37.19
EER89980 Sorghum plasma membrane 36.88 36.88
EES15875 Sorghum plasma membrane 34.05 36.03
EES13374 Sorghum plasma membrane 35.71 35.77
EES11151 Sorghum plasma membrane 34.39 35.57
OQU81851 Sorghum plasma membrane 33.06 35.35
OQU87541 Sorghum cytosol, peroxisome, plasma membrane 35.88 35.24
EES14657 Sorghum plasma membrane 33.22 35.09
EES15877 Sorghum plasma membrane 33.22 34.97
KXG26617 Sorghum plasma membrane 33.55 34.3
EER91957 Sorghum plasma membrane 33.72 34.12
OQU93471 Sorghum plasma membrane 33.89 33.72
EES05323 Sorghum plasma membrane 33.39 33.67
KXG32694 Sorghum cytosol 32.06 32.88
KXG28299 Sorghum plasma membrane 31.23 32.58
OQU83318 Sorghum mitochondrion, plasma membrane 27.24 31.97
EES12425 Sorghum plasma membrane 26.08 28.86
EES00465 Sorghum plastid 31.89 28.79
EES19057 Sorghum plastid 9.8 23.6
Protein Annotations
MapMan:24.2.2.9EntrezGene:8072184UniProt:A0A1B6PGD5GO:GO:0003674GO:GO:0005215GO:GO:0005575
GO:GO:0006810GO:GO:0008150GO:GO:0016020GO:GO:0016021GO:GO:0022857GO:GO:0055085
EnsemblPlants:KXG24751ProteinID:KXG24751ProteinID:KXG24751.1InterPro:MFS_trans_sfPFAM:PF00854InterPro:POT_fam
PANTHER:PTHR11654PANTHER:PTHR11654:SF114EnsemblPlantsGene:SORBI_3007G081300SUPFAM:SSF103473TMHMM:TMhelixUniParc:UPI00081ADE6A
SEG:seg:::::
Description
hypothetical protein
Coordinates
chr7:+:9690201..9696800
Molecular Weight (calculated)
64429.0 Da
IEP (calculated)
7.541
GRAVY (calculated)
0.407
Length
602 amino acids
Sequence
(BLAST)
001: MDDAERSLQL QAPESSVDWR GRPCHQQRHG GMRAAVFILV FQASQTAALA AVGSNLITFV FGELHFPLSQ AANVVTNFVG TVFILSPLGG FLSDSYAGCF
101: WTLLAFAAAE LAGLVLLAVQ AHLPQLKSAP CNMLTMAGSC EPASGSKAAI FFVALYLVAL GTGCVMPNMT TYGGDQFAGA AAEKDASKRL STYFNLSYFG
201: YCVAEVVALT AVVWAQTRFG MAVGFGLAAA ALGAGLVTLV SGAVLYRNKP PRGSVIFTPI ARVFVAAFSK RKQICPSGSS NPAHTAAGDP AVVDGDGDFR
301: HANKFRFLDK ACIRDAADTV PESEWRLCTA AEVQQTKTLL AVLPIVACTI VTNTVLAQLQ TFSVQQGSVM DTRLAPGSSS SFRIPPASLQ AIPYAMLLAL
401: VPAYELLLVP LMRRLTGTRS GITPLQRIGV GLCLVALSMA SAAAVERRRR DAALSSRQLS VLWLVPQFFV FGVSELFTNV GLMEFFYKQA ATAGTMQMQA
501: FFMAFFYCSF SFGFFLSSVL VSLVNRVTAS GGRRGWLGDN DLNKDRLDLF YWVLAALSVL NFFCYLLCAR WYNSGAGGSE TDEAVAPGEI ASEEEDDDKG
601: LI
Best Arabidopsis Sequence Match ( AT1G59740.1 )
(BLAST)
001: MAEINKQSNK WEQEEVSNEN NWELAEEESV DWRGRPSNPN KHGGMRAALF VLGLQAFEIM GIAAVGNNLI TYVINEMHFP LSKAANIVTN FVGTIFIFAL
101: LGGYLSDAFL GSFWTIIIFG FVELSGFILL SVQAHLPQLK PPKCNPLIDQ TCEEAKGFKA MIFFMALYLV ALGSGCVKPN MIAHGADQFS QSHPKQSKRL
201: SSYFNAAYFA FSMGELIALT LLVWVQTHSG MDIGFGVSAA AMTMGIISLV SGTMYFRNKR PRRSIFTPIA HVIVAAILKR KLASPSDPRM LHGDHHVAND
301: VVPSSTLPHT PRFRFLDKAC IKIQDTNTKE SPWRLCTVTQ VEQVKTLISL VPIFASTIVF NTILAQLQTF SVQQGSSMNT RLSNSFHIPP ASLQAIPYIM
401: LIFLVPLYDS FLVPFARKLT GHNSGIPPLT RIGIGLFLST FSMVSAAMLE KKRRDSSVLD GRILSIFWIT PQFLIFGISE MFTAVGLIEF FYKQSAKGME
501: SFLMALTYCS YSFGFYFSSV LVSVVNKITS TSVDSKGWLG ENDLNKDRLD LFYWLLAVLS LLNFLSYLFW SRWNIKSSRR NNTNVVGDEN I
Arabidopsis Description
NPF4.3Protein NRT1/ PTR FAMILY 4.3 [Source:UniProtKB/Swiss-Prot;Acc:Q93VV5]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.