Factsheet for VIT_12s0035g01820.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, golgi, plasma membrane

Predictor Summary:

cytosol 1
golgi 2
vacuole 2
extracellular 1
endoplasmic reticulum 1
plasma membrane 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, peroxisome, plasma membrane
Any Predictor:	cytosol, peroxisome, secretory
BaCelLo:	cytosol
MultiLoc:	golgi
Plant-mPloc:	vacuole
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH51284	Soybean	plasma membrane	70.49	75.84
KRH01875	Soybean	plasma membrane	66.07	74.77
Solyc01g103030.2.1	Tomato	cytosol, peroxisome, plasma membrane	72.79	73.27
PGSC0003DMT400053373	Potato	cytosol, peroxisome, plasma membrane	72.62	73.22
KRH26263	Soybean	cytosol, peroxisome, plasma membrane	72.95	72.71
AT1G59740.1	Thale cress	plasma membrane	69.67	71.91
Bra035429.1-P	Field mustard	plasma membrane	68.36	70.2
Bra027836.1-P	Field mustard	plasma membrane	68.85	69.65
CDY45893	Canola	golgi, peroxisome, plasma membrane	53.93	68.97
CDY65523	Canola	plastid	36.39	68.52
CDY70795	Canola	plasma membrane	34.92	67.41
CDY45147	Canola	mitochondrion	36.39	66.87
CDY67653	Canola	peroxisome	38.85	65.29
TraesCS2A01G309100.1	Wheat	plasma membrane	61.15	64.31
TraesCS2B01G326200.1	Wheat	plasma membrane	61.15	64.31
TraesCS2D01G307400.1	Wheat	plasma membrane	61.31	64.26
Zm00001d003603_P001	Maize	plasma membrane	62.13	64.24
EES12219	Sorghum	plasma membrane	61.8	64.01
Os04t0441800-01	Rice	plasma membrane	61.97	61.87
KXG24751	Sorghum	peroxisome, plasma membrane, vacuole	53.61	54.32
VIT_18s0089g01010.t01	Wine grape	plasma membrane	71.64	48.29
Zm00001d049349_P001	Maize	mitochondrion	52.62	44.77
HORVU2Hr1G076880.23	Barley	golgi, peroxisome	39.84	41.4
VIT_01s0026g01570.t01	Wine grape	plasma membrane	37.7	39.32
VIT_17s0000g05640.t01	Wine grape	cytosol, plasma membrane, plastid	38.2	38.2
VIT_11s0016g05170.t01	Wine grape	plasma membrane	35.74	37.85
VIT_14s0060g00220.t01	Wine grape	plasma membrane	37.05	36.57
VIT_11s0016g05180.t01	Wine grape	plasma membrane	34.59	36.07
VIT_18s0001g11280.t01	Wine grape	plastid	37.21	35.69
VIT_02s0154g00260.t01	Wine grape	plastid	36.89	34.94
VIT_02s0087g00580.t01	Wine grape	plasma membrane	16.23	33.45
VIT_12s0059g01240.t01	Wine grape	plastid	34.92	32.82
VIT_01s0150g00250.t01	Wine grape	cytosol, peroxisome, plasma membrane	31.8	30.31

Protein Annotations

EntrezGene:100243755	wikigene:100243755	MapMan:24.2.2.9	EMBL:AM471865	ProteinID:CAN63859	ProteinID:CAN63859.1
ProteinID:CCB55004	ProteinID:CCB55004.1	UniProt:F6HK01	EMBL:FN595990	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0022857
GO:GO:0055085	EntrezGene:LOC100243755	wikigene:LOC100243755	InterPro:MFS_trans_sf	PFAM:PF00854	InterPro:POT_fam
PANTHER:PTHR11654	PANTHER:PTHR11654:SF187	SUPFAM:SSF103473	TIGR:TC57321	TMHMM:TMhelix	UniParc:UPI00015CB42B
ArrayExpress:VIT_12s0035g01820	EnsemblPlantsGene:VIT_12s0035g01820	EnsemblPlants:VIT_12s0035g01820.t01	unigene:Vvi.5921	RefSeq:XP_002268504	RefSeq:XP_002268504.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr12:+:22005656..22008887

Molecular Weight (calculated)

67251.7 Da

IEP (calculated)

8.933

GRAVY (calculated)

0.294

Length

610 amino acids

Sequence
(BLAST)

001: METRRQTNKG EEGMGVSTGH EDTATATTVD WRGRPSNPEK HGGMRAASFV LGLQAFEIMG IAAVGNNLIT YVINEMHFPL STSANIVTNF IGTVFLLALL
101: GGCISDSYLG SFWTMLIFGF VELSGFILLS VQAHLPQLKP PQCNMVTDGE RCVEAKGFKA FIFYLALYLV ALGSGCVKPN MVAHGADQFN RDSPKQSKSL
201: SSYFNAAYFA FSIGELIALT VLVWVQTHSG MDVGFGVSAA AMAMGLISLV SGTLLYRNKP PQGSILTPIA QVFVAAILKR KQRCPPSPHM LHGSQNNVLV
301: GSVATSKFNK YRFLDKACIK IQDGNNVKES PWRLCTVAQV QQVKILLSVI PIFACTIVFN TILAQMQTFS VQQGSSMNTQ LTKNFHIPPA SLQAIPYIIL
401: IFLVPLYDAF FVPFARRFTG NVSGISPLQR IGFGLFVATF SMVAAAIMED KRRNAAVNEK KILSIFWITP QFLIFGLSEM FTAVGLIEFF YKQSSTGMQA
501: FLTAITYFSY SFGFYFSSVL VSLVNKITSS SSSDGWLKDD DLNKDRLDLF YWLLAVLSFI NFLNYLFWAG WWYSYKPSSS VPLQSDAHGE EFMGQGFNSS
601: KIVADVNSIP

Best Arabidopsis Sequence Match ( AT1G59740.1 )
(BLAST)

001: MAEINKQSNK WEQEEVSNEN NWELAEEESV DWRGRPSNPN KHGGMRAALF VLGLQAFEIM GIAAVGNNLI TYVINEMHFP LSKAANIVTN FVGTIFIFAL
101: LGGYLSDAFL GSFWTIIIFG FVELSGFILL SVQAHLPQLK PPKCNPLIDQ TCEEAKGFKA MIFFMALYLV ALGSGCVKPN MIAHGADQFS QSHPKQSKRL
201: SSYFNAAYFA FSMGELIALT LLVWVQTHSG MDIGFGVSAA AMTMGIISLV SGTMYFRNKR PRRSIFTPIA HVIVAAILKR KLASPSDPRM LHGDHHVAND
301: VVPSSTLPHT PRFRFLDKAC IKIQDTNTKE SPWRLCTVTQ VEQVKTLISL VPIFASTIVF NTILAQLQTF SVQQGSSMNT RLSNSFHIPP ASLQAIPYIM
401: LIFLVPLYDS FLVPFARKLT GHNSGIPPLT RIGIGLFLST FSMVSAAMLE KKRRDSSVLD GRILSIFWIT PQFLIFGISE MFTAVGLIEF FYKQSAKGME
501: SFLMALTYCS YSFGFYFSSV LVSVVNKITS TSVDSKGWLG ENDLNKDRLD LFYWLLAVLS LLNFLSYLFW SRWNIKSSRR NNTNVVGDEN I

Arabidopsis Description

NPF4.3Protein NRT1/ PTR FAMILY 4.3 [Source:UniProtKB/Swiss-Prot;Acc:Q93VV5]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.