Factsheet for VIT_02s0087g00580.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 1
plasma membrane 4
endoplasmic reticulum 2
vacuole 2
extracellular 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, secretory
BaCelLo:	cytosol
EpiLoc:	plasma membrane
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	vacuole
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G081050.1	Barley	endoplasmic reticulum, extracellular	12.5	53.62
VIT_12s0059g01240.t01	Wine grape	plastid	92.57	42.22
KRH73378	Soybean	cytosol, peroxisome, plasma membrane	66.89	33.67
KRH14759	Soybean	plasma membrane	66.55	33.56
PGSC0003DMT400010957	Potato	cytosol, peroxisome, plasma membrane	65.2	32.6
Solyc12g006050.1.1	Tomato	cytosol, peroxisome, plasma membrane	64.53	32.26
PGSC0003DMT400001784	Potato	cytosol, peroxisome, plasma membrane	64.19	32.04
Solyc07g049290.2.1	Tomato	nucleus	63.51	31.81
AT3G21670.1	Thale cress	plasma membrane	59.46	29.83
Bra031295.1-P	Field mustard	plasma membrane	58.11	29.45
Bra023868.1-P	Field mustard	plasma membrane	57.09	29.24
EES05323	Sorghum	plasma membrane	57.43	28.48
GSMUA_Achr3P05990_001	Banana	cytosol, plasma membrane, plastid	54.73	28.22
TraesCS5D01G419200.2	Wheat	plasma membrane	56.42	28.07
TraesCS5B01G414000.3	Wheat	plasma membrane	56.08	27.95
Zm00001d016982_P001	Maize	plasma membrane	56.08	27.85
TraesCS2D01G327000.1	Wheat	plasma membrane	53.04	27.79
TraesCS2B01G346100.1	Wheat	plasma membrane	52.7	27.61
TraesCS5A01G409600.1	Wheat	plasma membrane	55.07	27.44
Os02t0580900-01	Rice	plasma membrane	56.42	27.42
HORVU5Hr1G099170.6	Barley	plasma membrane	55.41	26.89
TraesCS2A01G335800.1	Wheat	mitochondrion	53.38	26.12
VIT_11s0016g05170.t01	Wine grape	plasma membrane	41.22	21.18
VIT_02s0154g00260.t01	Wine grape	plastid	44.26	20.34
CDY44319	Canola	plasma membrane	29.39	18.47
CDY38629	Canola	plasma membrane	29.39	18.16
VIT_11s0016g05180.t01	Wine grape	plasma membrane	34.12	17.27
VIT_01s0026g01570.t01	Wine grape	plasma membrane	33.11	16.75
VIT_12s0035g01820.t01	Wine grape	golgi, peroxisome, plasma membrane	33.45	16.23
VIT_17s0000g05640.t01	Wine grape	cytosol, plasma membrane, plastid	33.45	16.23
VIT_18s0001g11280.t01	Wine grape	plastid	32.43	15.09
VIT_14s0060g00220.t01	Wine grape	plasma membrane	31.08	14.89
VIT_01s0150g00250.t01	Wine grape	cytosol, peroxisome, plasma membrane	30.74	14.22
VIT_18s0089g01010.t01	Wine grape	plasma membrane	33.78	11.05
Os04t0464400-00	Rice	peroxisome, plasma membrane	13.51	6.42
HORVU2Hr1G065480.1	Barley	golgi, plasma membrane	0.0	0.0

Protein Annotations

Gene3D:1.20.1250.20	EntrezGene:100247736	wikigene:100247736	MapMan:24.2.2.9	UniProt:A5AH85	EMBL:AM426734
ProteinID:CAN80060	ProteinID:CAN80060.1	ProteinID:CCB52227	ProteinID:CCB52227.1	EMBL:FN595769	GO:GO:0003674
GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021
GO:GO:0022857	GO:GO:0055085	EntrezGene:LOC100247736	wikigene:LOC100247736	InterPro:MFS_trans_sf	PFAM:PF00854
InterPro:POT_fam	PANTHER:PTHR11654	PANTHER:PTHR11654:SF154	SUPFAM:SSF103473	TMHMM:TMhelix	UniParc:UPI0001523A8E
ArrayExpress:VIT_02s0087g00580	EnsemblPlantsGene:VIT_02s0087g00580	EnsemblPlants:VIT_02s0087g00580.t01	RefSeq:XP_002269955	RefSeq:XP_002269955.1	SEG:seg

Description

No Description!

Coordinates

chr2:+:17980545..17981559

Molecular Weight (calculated)

33825.5 Da

IEP (calculated)

9.290

GRAVY (calculated)

0.187

Length

296 amino acids

Sequence
(BLAST)

001: MPNHLNPDNY SASGNKDNPW IVSTVNQVEE VKMVIKLLPI WSTCILFWTV YSQMTTFMIE QATFMNQKIC SFVVPPGSLS VFLFISVLLF TSLNETIIVP
101: FARKLTHNVK GVTSLQRVGI GLIFSMVAMV TTAIVERQRR EAAVQHKTKI SAFWLVPQFF LVDAGEAFAY VGQLEFFIRK APDRMKSMST GLFLSTLAMG
201: FFVSSLLVSL VDKVTNMRWL RSNLNWGKLD NFYWMLAVLG VLNFLAFLVF AMRHQYMTLQ YNSSDVYGEN ELKKGWNEGI TSEMEKKERV EGKEEP

Best Arabidopsis Sequence Match ( AT1G12110.1 )
(BLAST)

001: MSLPETKSDD ILLDAWDFQG RPADRSKTGG WASAAMILCI EAVERLTTLG IGVNLVTYLT GTMHLGNATA ANTVTNFLGT SFMLCLLGGF IADTFLGRYL
101: TIAIFAAIQA TGVSILTLST IIPGLRPPRC NPTTSSHCEQ ASGIQLTVLY LALYLTALGT GGVKASVSGF GSDQFDETEP KERSKMTYFF NRFFFCINVG
201: SLLAVTVLVY VQDDVGRKWG YGICAFAIVL ALSVFLAGTN RYRFKKLIGS PMTQVAAVIV AAWRNRKLEL PADPSYLYDV DDIIAAEGSM KGKQKLPHTE
301: QFRSLDKAAI RDQEAGVTSN VFNKWTLSTL TDVEEVKQIV RMLPIWATCI LFWTVHAQLT TLSVAQSETL DRSIGSFEIP PASMAVFYVG GLLLTTAVYD
401: RVAIRLCKKL FNYPHGLRPL QRIGLGLFFG SMAMAVAALV ELKRLRTAHA HGPTVKTLPL GFYLLIPQYL IVGIGEALIY TGQLDFFLRE CPKGMKGMST
501: GLLLSTLALG FFFSSVLVTI VEKFTGKAHP WIADDLNKGR LYNFYWLVAV LVALNFLIFL VFSKWYVYKE KRLAEVGIEL DDEPSIPMGH

Arabidopsis Description

NPF6.3NRT1.1 [Source:UniProtKB/TrEMBL;Acc:A0A178W8F7]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.