Factsheet for TraesCS5D01G419200.2

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 3
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G414000.3	Wheat	plasma membrane	96.97	97.14
TraesCS5A01G409600.1	Wheat	plasma membrane	93.78	93.94
HORVU5Hr1G099170.6	Barley	plasma membrane	94.62	92.3
HORVU2Hr1G065480.1	Barley	golgi, plasma membrane	32.44	85.78
EES05323	Sorghum	plasma membrane	81.01	80.74
Os02t0580900-01	Rice	plasma membrane	82.35	80.46
Zm00001d016982_P001	Maize	plasma membrane	79.5	79.36
TraesCS2D01G327000.1	Wheat	plasma membrane	69.08	72.74
GSMUA_Achr3P05990_001	Banana	cytosol, plasma membrane, plastid	65.55	67.94
KRH73378	Soybean	cytosol, peroxisome, plasma membrane	63.87	64.63
KRH14759	Soybean	plasma membrane	63.36	64.22
Bra031295.1-P	Field mustard	plasma membrane	62.69	63.87
Bra023868.1-P	Field mustard	plasma membrane	61.85	63.67
Solyc12g006050.1.1	Tomato	cytosol, peroxisome, plasma membrane	63.19	63.51
PGSC0003DMT400010957	Potato	cytosol, peroxisome, plasma membrane	62.69	63.01
AT3G21670.1	Thale cress	plasma membrane	61.85	62.37
Solyc07g049290.2.1	Tomato	nucleus	61.85	62.27
PGSC0003DMT400001784	Potato	cytosol, peroxisome, plasma membrane	62.02	62.23
CDY44319	Canola	plasma membrane	49.24	62.21
CDY38629	Canola	plasma membrane	49.41	61.38
VIT_12s0059g01240.t01	Wine grape	plastid	63.7	58.4
VIT_02s0087g00580.t01	Wine grape	plasma membrane	28.07	56.42
TraesCS4D01G361500.1	Wheat	peroxisome	49.75	48.84
TraesCS1D01G032700.1	Wheat	peroxisome	47.56	48.63
TraesCS7D01G297000.1	Wheat	plasma membrane	48.91	48.26
TraesCS1D01G214300.1	Wheat	plasma membrane	48.24	48.24
TraesCS1D01G214200.1	Wheat	plasma membrane	47.4	47.32
TraesCS2D01G307400.1	Wheat	plasma membrane	36.64	37.46
TraesCS4D01G087900.1	Wheat	golgi, peroxisome, plasma membrane	35.97	35.37
TraesCS7D01G357300.2	Wheat	plasma membrane	35.97	34.63
TraesCS2D01G259400.2	Wheat	plasma membrane	33.11	34.02
TraesCS5D01G398000.1	Wheat	plasma membrane	32.77	33.56
TraesCS2D01G348500.1	Wheat	plasma membrane	31.26	33.27
TraesCS3D01G081100.1	Wheat	cytosol, peroxisome, plasma membrane, plastid	35.63	32.42
TraesCS5D01G067100.1	Wheat	plasma membrane	30.42	32.26
TraesCS2D01G348600.1	Wheat	plasma membrane	29.92	31.84
TraesCS5D01G067400.1	Wheat	plasma membrane	29.58	31.37
TraesCS2D01G348400.1	Wheat	plasma membrane	26.39	28.55

Protein Annotations

EnsemblPlants:TraesCS5D01G419200.2	EnsemblPlantsGene:TraesCS5D01G419200	Gene3D:1.20.1250.20	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0022857	GO:GO:0055085	InterPro:IPR020846
InterPro:MFS_dom	InterPro:MFS_trans_sf	InterPro:POT_fam	PANTHER:PTHR11654	PANTHER:PTHR11654:SF154	PFAM:PF00854
SEG:seg	SUPFAM:SSF103473	TIGR:cd06174	TMHMM:TMhelix	MapMan:24.2.2.9	:

Description

No Description!

Coordinates

chr5D:-:480462421..480465878

Molecular Weight (calculated)

64134.1 Da

IEP (calculated)

7.580

GRAVY (calculated)

0.372

Length

595 amino acids

Sequence
(BLAST)

001: MQVSAGGHGG HSDADDAVDF RGNPVDKSKT GGWLGAGLIL GTELAERVCV IGISMNLVTY LVGELHLSNA KSANVVTNFM GTLNLLALVG GFLADAKLGR
101: YLTIAVSATI AAAGVSLLTV DTVVPSMRPP PCVDARGAQG HECVPASGGQ LALLYVALYV IAAGAGGLKA NVSGFGSDQF DGRNPREERA MVFFFNRFYF
201: CISLGSLFAV TVLVYVQDNV GRGWGYGVSA AAMALGVVVL VAGTSKYRYR RPAGSPLTVI GRVMWTAWKK RKLPAPANAD ELNGFHTAKV AHTDRLRCLD
301: KAAVMDQVDL AASPTKEEQA SASTMTEVEE VKMVLNLLPI WSTCILFWTI YSQMTTFSVE QATRMDRHLN AGFLIPAGSL SVFLFLSILL FTSLNERLLV
401: PLAARLTGRP QGLTSLQRVG TGLVFATVAM VVAALVEKMR RDAANGEPHV AISAFWLVPQ FFLVGAGEAF AYVGQLEFFI REAPERMKSM STGLFLVTLS
501: MGFFLSSFLV FLVHTVTRGA WIRNNLDRGR LDLFYWMLAV LGVVNFLVFV VIARRHEYKP STSVVVAPAG EDNDTTEKEM DDVLVVSENT VGMDV

Best Arabidopsis Sequence Match ( AT3G21670.1 )
(BLAST)

001: MVHVSSSHGA KDGSEEAYDY RGNPPDKSKT GGWLGAGLIL GSELSERICV MGISMNLVTY LVGDLHISSA KSATIVTNFM GTLNLLGLLG GFLADAKLGR
101: YKMVAISASV TALGVLLLTV ATTISSMRPP ICDDFRRLHH QCIEANGHQL ALLYVALYTI ALGGGGIKSN VSGFGSDQFD TSDPKEEKQM IFFFNRFYFS
201: ISVGSLFAVI ALVYVQDNVG RGWGYGISAA TMVVAAIVLL CGTKRYRFKK PKGSPFTTIW RVGFLAWKKR KESYPAHPSL LNGYDNTTVP HTEMLKCLDK
301: AAISKNESSP SSKDFEEKDP WIVSTVTQVE EVKLVMKLVP IWATNILFWT IYSQMTTFTV EQATFMDRKL GSFTVPAGSY SAFLILTILL FTSLNERVFV
401: PLTRRLTKKP QGITSLQRIG VGLVFSMAAM AVAAVIENAR REAAVNNDKK ISAFWLVPQY FLVGAGEAFA YVGQLEFFIR EAPERMKSMS TGLFLSTISM
501: GFFVSSLLVS LVDRVTDKSW LRSNLNKARL NYFYWLLVVL GALNFLIFIV FAMKHQYKAD VITVVVTDDD SVEKEVTKKE SSEFELKDIP

Arabidopsis Description

NPF6.4Protein NRT1/ PTR FAMILY 6.4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVE0]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.