Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- peroxisome 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 3
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS2A01G251800.1 | |
| TraesCS2B01G271700.1 | |
| TraesCS2D01G252600.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G12110.1 | TraesCS2A01G251800.1 | AT1G30270.1 | 19766570 |
| AT1G12110.1 | TraesCS2B01G271700.1 | AT1G30270.1 | 19766570 |
| AT1G12110.1 | TraesCS2D01G252600.1 | AT1G30270.1 | 19766570 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G201900.1 | Wheat | plasma membrane | 99.5 | 99.5 |
| TraesCS7A01G301700.1 | Wheat | plasma membrane | 99.17 | 99.17 |
| HORVU7Hr1G071600.2 | Barley | mitochondrion | 97.68 | 94.85 |
| Os08t0155400-01 | Rice | plasma membrane | 75.79 | 87.05 |
| EES13374 | Sorghum | plasma membrane | 86.4 | 86.69 |
| Zm00001d024587_P001 | Maize | plasma membrane | 85.57 | 84.87 |
| GSMUA_AchrUn_... | Banana | cytosol, peroxisome, plasma membrane | 70.81 | 73.12 |
| GSMUA_Achr1P20240_001 | Banana | plasma membrane | 69.98 | 71.16 |
| PGSC0003DMT400012226 | Potato | cytosol, peroxisome, plasma membrane | 66.5 | 67.97 |
| Solyc08g078950.2.1 | Tomato | cytosol, peroxisome, plasma membrane | 66.33 | 67.8 |
| CDY30051 | Canola | cytosol, peroxisome, plasma membrane | 38.31 | 66.19 |
| KRH04097 | Soybean | peroxisome | 65.17 | 66.16 |
| KRH28055 | Soybean | plasma membrane | 64.18 | 66.04 |
| TraesCS4D01G361500.1 | Wheat | peroxisome | 66.33 | 66.01 |
| GSMUA_Achr6P36750_001 | Banana | plasma membrane | 72.14 | 65.81 |
| PGSC0003DMT400032493 | Potato | cytosol, peroxisome, plasma membrane | 64.34 | 65.76 |
| KRH77380 | Soybean | cytosol, plasma membrane, plastid | 63.68 | 65.53 |
| VIT_02s0154g00260.t01 | Wine grape | plastid | 69.82 | 65.37 |
| CDY69100 | Canola | plasma membrane | 35.99 | 65.36 |
| Bra019744.1-P | Field mustard | plasma membrane | 29.02 | 65.3 |
| Solyc08g007430.1.1 | Tomato | cytosol, peroxisome, plasma membrane | 63.85 | 65.25 |
| TraesCS1D01G214200.1 | Wheat | plasma membrane | 64.34 | 65.1 |
| TraesCS1D01G214300.1 | Wheat | plasma membrane | 64.18 | 65.04 |
| Bra016789.1-P | Field mustard | plasma membrane | 61.36 | 62.71 |
| KRH57369 | Soybean | plasma membrane | 61.19 | 62.54 |
| CDY21035 | Canola | plasma membrane | 59.54 | 62.43 |
| Solyc06g060620.2.1 | Tomato | plasma membrane | 61.19 | 62.33 |
| AT1G12110.1 | Thale cress | plasma membrane | 60.86 | 62.2 |
| CDY31242 | Canola | plasma membrane | 59.2 | 62.09 |
| CDY15967 | Canola | plasma membrane | 58.87 | 61.85 |
| Bra026991.1-P | Field mustard | plasma membrane | 60.2 | 61.63 |
| CDY26539 | Canola | plasma membrane | 58.21 | 61.15 |
| PGSC0003DMT400035882 | Potato | plasma membrane | 60.03 | 61.15 |
| TraesCS1D01G032700.1 | Wheat | peroxisome | 53.23 | 55.15 |
| TraesCS2D01G327000.1 | Wheat | plasma membrane | 47.43 | 50.62 |
| TraesCS5D01G419200.2 | Wheat | plasma membrane | 48.26 | 48.91 |
| TraesCS7D01G357300.2 | Wheat | plasma membrane | 37.98 | 37.05 |
| TraesCS2D01G307400.1 | Wheat | plasma membrane | 34.49 | 35.74 |
| TraesCS2D01G259400.2 | Wheat | plasma membrane | 33.17 | 34.54 |
| TraesCS4D01G087900.1 | Wheat | golgi, peroxisome, plasma membrane | 34.49 | 34.38 |
| TraesCS5D01G398000.1 | Wheat | plasma membrane | 32.01 | 33.22 |
| TraesCS2D01G348600.1 | Wheat | plasma membrane | 30.68 | 33.09 |
| TraesCS2D01G348500.1 | Wheat | plasma membrane | 30.51 | 32.92 |
| TraesCS5D01G067100.1 | Wheat | plasma membrane | 30.51 | 32.8 |
| TraesCS5D01G067400.1 | Wheat | plasma membrane | 30.51 | 32.8 |
| TraesCS3D01G081100.1 | Wheat | cytosol, peroxisome, plasma membrane, plastid | 34.16 | 31.5 |
| TraesCS2D01G348400.1 | Wheat | plasma membrane | 26.37 | 28.91 |
Protein Annotations
| EnsemblPlants:TraesCS7D01G297000.1 | EnsemblPlantsGene:TraesCS7D01G297000 | Gene3D:1.20.1250.20 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 |
| GO:GO:0006810 | GO:GO:0006857 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0022857 | GO:GO:0055085 |
| InterPro:MFS_trans_sf | InterPro:POT_fam | InterPro:PTR2_symporter_CS | PANTHER:PTHR11654 | PANTHER:PTHR11654:SF78 | PFAM:PF00854 |
| ScanProsite:PS01022 | SEG:seg | SUPFAM:SSF103473 | TMHMM:TMhelix | MapMan:24.2.2.9 | : |
Description
No Description!
Coordinates
chr7D:-:374565208..374572064
Molecular Weight (calculated)
65056.5 Da
IEP (calculated)
9.621
GRAVY (calculated)
0.362
Length
603 amino acids
Sequence
(BLAST)
(BLAST)
001: MVGLLPQTNA AAQAEVLGDA WDYRGRPAAR STTGRWGAAA MILVAELNER LTTLGIAVNL VTYLTATMHV GNAEAANVVT NFMGTSFMLC LLGGFVADSF
101: LGRYLTIAIF TAIQASGVTI LTISTAAPGL RPPACTAEGG GIGTCSRASG AQLGVLYLAL YLTALGTGGL KSSVSGFGSD QFDESDRTEK SQMMRFFNWF
201: FFFISLGSLL AVTVLVYVQD NLGRPWGYGA CAASIAVGLV VFLAGTRRYR FKKLAGSPLT QIAAVVVAAW RKRGVQLPTD TSMLYDIDVG KVAAIEGAST
301: KKSKLKERIP HTKQFRFLDH AAINSDPAGE PTKWQLATLT DVEEVKTVAR MLPIWATTIM FWTVYAQMTT FSVSQATTMD RHIGPSFQIP AGSLTVFFVG
401: SILLTVPIYD RIVVPVSRRL NGNPHGLTPL QRIGIGLVLS ILAMTSAALV EVKRLRVARD SAVPAGAPVP MTVFWLIPQF FFVGAGEAFT YIGQLDFFLR
501: ECPKGMKTMS TGLFLSTLSL GFFVSSALVT VVHKITGDRR PWIADDLNKG ELYKFYWLLA GVCLANLVVY LFAARWYKYK AGRPGADGSV NGVEMADAEP
601: CLH
101: LGRYLTIAIF TAIQASGVTI LTISTAAPGL RPPACTAEGG GIGTCSRASG AQLGVLYLAL YLTALGTGGL KSSVSGFGSD QFDESDRTEK SQMMRFFNWF
201: FFFISLGSLL AVTVLVYVQD NLGRPWGYGA CAASIAVGLV VFLAGTRRYR FKKLAGSPLT QIAAVVVAAW RKRGVQLPTD TSMLYDIDVG KVAAIEGAST
301: KKSKLKERIP HTKQFRFLDH AAINSDPAGE PTKWQLATLT DVEEVKTVAR MLPIWATTIM FWTVYAQMTT FSVSQATTMD RHIGPSFQIP AGSLTVFFVG
401: SILLTVPIYD RIVVPVSRRL NGNPHGLTPL QRIGIGLVLS ILAMTSAALV EVKRLRVARD SAVPAGAPVP MTVFWLIPQF FFVGAGEAFT YIGQLDFFLR
501: ECPKGMKTMS TGLFLSTLSL GFFVSSALVT VVHKITGDRR PWIADDLNKG ELYKFYWLLA GVCLANLVVY LFAARWYKYK AGRPGADGSV NGVEMADAEP
601: CLH
001: MSLPETKSDD ILLDAWDFQG RPADRSKTGG WASAAMILCI EAVERLTTLG IGVNLVTYLT GTMHLGNATA ANTVTNFLGT SFMLCLLGGF IADTFLGRYL
101: TIAIFAAIQA TGVSILTLST IIPGLRPPRC NPTTSSHCEQ ASGIQLTVLY LALYLTALGT GGVKASVSGF GSDQFDETEP KERSKMTYFF NRFFFCINVG
201: SLLAVTVLVY VQDDVGRKWG YGICAFAIVL ALSVFLAGTN RYRFKKLIGS PMTQVAAVIV AAWRNRKLEL PADPSYLYDV DDIIAAEGSM KGKQKLPHTE
301: QFRSLDKAAI RDQEAGVTSN VFNKWTLSTL TDVEEVKQIV RMLPIWATCI LFWTVHAQLT TLSVAQSETL DRSIGSFEIP PASMAVFYVG GLLLTTAVYD
401: RVAIRLCKKL FNYPHGLRPL QRIGLGLFFG SMAMAVAALV ELKRLRTAHA HGPTVKTLPL GFYLLIPQYL IVGIGEALIY TGQLDFFLRE CPKGMKGMST
501: GLLLSTLALG FFFSSVLVTI VEKFTGKAHP WIADDLNKGR LYNFYWLVAV LVALNFLIFL VFSKWYVYKE KRLAEVGIEL DDEPSIPMGH
101: TIAIFAAIQA TGVSILTLST IIPGLRPPRC NPTTSSHCEQ ASGIQLTVLY LALYLTALGT GGVKASVSGF GSDQFDETEP KERSKMTYFF NRFFFCINVG
201: SLLAVTVLVY VQDDVGRKWG YGICAFAIVL ALSVFLAGTN RYRFKKLIGS PMTQVAAVIV AAWRNRKLEL PADPSYLYDV DDIIAAEGSM KGKQKLPHTE
301: QFRSLDKAAI RDQEAGVTSN VFNKWTLSTL TDVEEVKQIV RMLPIWATCI LFWTVHAQLT TLSVAQSETL DRSIGSFEIP PASMAVFYVG GLLLTTAVYD
401: RVAIRLCKKL FNYPHGLRPL QRIGLGLFFG SMAMAVAALV ELKRLRTAHA HGPTVKTLPL GFYLLIPQYL IVGIGEALIY TGQLDFFLRE CPKGMKGMST
501: GLLLSTLALG FFFSSVLVTI VEKFTGKAHP WIADDLNKGR LYNFYWLVAV LVALNFLIFL VFSKWYVYKE KRLAEVGIEL DDEPSIPMGH
Arabidopsis Description
NPF6.3NRT1.1 [Source:UniProtKB/TrEMBL;Acc:A0A178W8F7]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.