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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • cytosol 1
  • plastid 1
  • peroxisome 1
  • vacuole 2
  • extracellular 1
  • endoplasmic reticulum 1
  • plasma membrane 3
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, peroxisome, plastid, secretory
BaCelLo:cytosol
EpiLoc:plastid
MultiLoc:peroxisome
Plant-mPloc:vacuole
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
PGSC0003DMT400080484

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G12110.1 PGSC0003DMT400080484 AT1G30270.1 19766570
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc06g060620.2.1 Tomato plasma membrane 96.28 96.28
PGSC0003DMT400012226 Potato cytosol, peroxisome, plasma membrane 76.86 77.12
PGSC0003DMT400032493 Potato cytosol, peroxisome, plasma membrane 75.68 75.93
KRH04097 Soybean peroxisome 65.88 65.66
VIT_02s0154g00260.t01 Wine grape plastid 70.61 64.91
GSMUA_Achr11P... Banana plasma membrane 62.16 64.9
GSMUA_Achr8P11180_001 Banana peroxisome 61.32 63.8
GSMUA_Achr8P11190_001 Banana peroxisome 60.81 63.72
CDY30051 Canola cytosol, peroxisome, plasma membrane 37.33 63.32
KRH57369 Soybean plasma membrane 61.66 61.86
CDY21035 Canola plasma membrane 59.8 61.57
CDY31242 Canola plasma membrane 59.8 61.57
Bra016789.1-P Field mustard plasma membrane 60.98 61.19
CDY15967 Canola plasma membrane 59.29 61.15
GSMUA_Achr11P... Banana peroxisome 58.11 61.1
GSMUA_AchrUn_... Banana cytosol, peroxisome, plasma membrane 60.14 60.96
GSMUA_Achr1P20240_001 Banana plasma membrane 60.98 60.88
CDY26539 Canola plasma membrane 58.95 60.8
Os08t0155400-01 Rice plasma membrane 53.72 60.57
EES13374 Sorghum plasma membrane 61.49 60.57
AT1G12110.1 Thale cress plasma membrane 60.3 60.51
Bra026991.1-P Field mustard plasma membrane 59.97 60.27
TraesCS7B01G201900.1 Wheat plasma membrane 61.32 60.2
Bra019744.1-P Field mustard plasma membrane 27.2 60.07
TraesCS7D01G297000.1 Wheat plasma membrane 61.15 60.03
TraesCS7A01G301700.1 Wheat plasma membrane 60.98 59.87
CDY69100 Canola plasma membrane 33.45 59.64
Zm00001d024587_P001 Maize plasma membrane 60.98 59.38
Os03t0103000-01 Rice cytosol, peroxisome, plasma membrane 58.78 59.08
HORVU7Hr1G071600.2 Barley mitochondrion 61.49 58.62
Zm00001d029932_P001 Maize plasma membrane 58.61 58.32
Os10t0554200-02 Rice plasma membrane 58.45 58.05
TraesCS1B01G224900.1 Wheat plasma membrane 58.45 58.05
EER91957 Sorghum plasma membrane 58.28 57.98
TraesCS4D01G361500.1 Wheat peroxisome 59.29 57.92
TraesCS4B01G375800.1 Wheat plasma membrane 59.12 57.66
TraesCS5A01G537100.1 Wheat peroxisome 59.12 57.47
TraesCS1D01G214200.1 Wheat plasma membrane 57.77 57.38
OQU93471 Sorghum plasma membrane 58.61 57.36
TraesCS1B01G225000.1 Wheat plasma membrane 57.6 57.31
TraesCS1A01G211000.1 Wheat cytosol 57.6 57.31
TraesCS1D01G214300.1 Wheat plasma membrane 57.43 57.14
TraesCS1A01G210900.1 Wheat plasma membrane 46.62 57.14
TraesCS4B01G371000.1 Wheat peroxisome 57.94 56.88
Zm00001d027285_P001 Maize cytosol, plasma membrane, vacuole 57.43 56.67
Zm00001d029933_P001 Maize cytosol, peroxisome, plasma membrane 56.25 56.63
HORVU4Hr1G088020.4 Barley nucleus, plasma membrane 59.29 56.52
HORVU1Hr1G053990.4 Barley peroxisome 58.45 56.08
GSMUA_Achr6P36750_001 Banana plasma membrane 61.49 55.07
PGSC0003DMT400075163 Potato plasma membrane 52.53 53.62
PGSC0003DMT400070732 Potato plasma membrane 51.86 53.39
PGSC0003DMT400053569 Potato endoplasmic reticulum, plasma membrane 23.14 51.5
PGSC0003DMT400010957 Potato cytosol, peroxisome, plasma membrane 46.62 46.62
PGSC0003DMT400001784 Potato cytosol, peroxisome, plasma membrane 46.28 46.21
HORVU1Hr1G054020.3 Barley mitochondrion, peroxisome, plastid 41.22 44.69
PGSC0003DMT400045415 Potato plasma membrane 36.15 37.22
PGSC0003DMT400007441 Potato plasma membrane 35.64 36.13
PGSC0003DMT400082762 Potato plasma membrane 26.86 35.18
PGSC0003DMT400053373 Potato cytosol, peroxisome, plasma membrane 35.47 34.71
PGSC0003DMT400030530 Potato mitochondrion 20.44 34.47
PGSC0003DMT400065182 Potato plasma membrane 34.29 34.47
PGSC0003DMT400030534 Potato plasma membrane 33.78 34.19
PGSC0003DMT400030533 Potato plasma membrane 32.6 33.16
PGSC0003DMT400045412 Potato mitochondrion 34.97 33.01
PGSC0003DMT400011063 Potato cytosol 31.76 32.25
PGSC0003DMT400046950 Potato plasma membrane 32.6 31.59
PGSC0003DMT400071504 Potato plasma membrane 31.08 30.82
PGSC0003DMT400072037 Potato cytosol, peroxisome, plasma membrane 33.61 30.47
PGSC0003DMT400054593 Potato plasma membrane 30.74 29.64
Protein Annotations
Gene3D:1.20.1250.20EntrezGene:102596643MapMan:24.2.2.9GO:GO:0003674GO:GO:0005215GO:GO:0005575
GO:GO:0006810GO:GO:0006857GO:GO:0008150GO:GO:0016020GO:GO:0016021GO:GO:0022857
GO:GO:0055085InterPro:IPR020846UniProt:M1B2Y3InterPro:MFS_domInterPro:MFS_trans_sfPFAM:PF00854
EnsemblPlantsGene:PGSC0003DMG400013815PGSC:PGSC0003DMG400013815EnsemblPlants:PGSC0003DMT400035882InterPro:POT_famScanProsite:PS01022ScanProsite:PS01023
PANTHER:PTHR11654PANTHER:PTHR11654:SF78InterPro:PTR2_symporter_CSSUPFAM:SSF103473TMHMM:TMhelixUniParc:UPI000294C8D9
RefSeq:XP_006366745.1SEG:seg::::
Description
Nitrate transporter [Source:PGSC_GENE;Acc:PGSC0003DMG400013815]
Coordinates
chr6:+:43655569..43659228
Molecular Weight (calculated)
65103.1 Da
IEP (calculated)
9.717
GRAVY (calculated)
0.405
Length
592 amino acids
Sequence
(BLAST)
001: MALPHTQQET KVVPDAWDYK GRHALRSTSG GWAGAAMILG VEAVERLVTL GIAVNLVVYL TKTMHLGNAS AANIVTNFMG TSYILTLLGG YVADTFLGRY
101: LTVGIGATVQ AIGVTILTIS TIIPSLQPPK CNLGSPSCIP ANGKQLAVLF TALYMTALGT GFLKSSVSGF GTDQFDESDP KEKGRMIKFF SWFFFLINVG
201: ALTAVTILVY IQDKVGRKFG YGICACAILI GLVFFLSGTK RYRFKKLVGS PLAQFASVFI AAWRKRHMKL PADSTVLFNI DDIIGDENLK DKQKLPHSKE
301: FRFLDKAAIK DSSSEFSGTA ILNNWNLATL TDVEEVKLVI RMLPTWGTSI MFWTVYAQMT TFSVSQATTM DRHIGKSFEI PPASLTAFFV ASVMVVIIFY
401: DRVIVPLCAR YLNSPHGFTP LTRIAIGLVT SIFAMIAAAL TEIKRLNVAQ SHGLTNNPNA VIPMSVFWLV PQFLLVGGGE AFTYIGQLDF FLRECPKGMK
501: TMSTGLFIST ISLGFFFSSI LVSIVDKVTA KSRPWLADNL NQGKLSNFYW LLAILSVLNV ILFFYCAKRY VYKEKRLAEV GIQMEDSGPV CH
Best Arabidopsis Sequence Match ( AT1G12110.1 )
(BLAST)
001: MSLPETKSDD ILLDAWDFQG RPADRSKTGG WASAAMILCI EAVERLTTLG IGVNLVTYLT GTMHLGNATA ANTVTNFLGT SFMLCLLGGF IADTFLGRYL
101: TIAIFAAIQA TGVSILTLST IIPGLRPPRC NPTTSSHCEQ ASGIQLTVLY LALYLTALGT GGVKASVSGF GSDQFDETEP KERSKMTYFF NRFFFCINVG
201: SLLAVTVLVY VQDDVGRKWG YGICAFAIVL ALSVFLAGTN RYRFKKLIGS PMTQVAAVIV AAWRNRKLEL PADPSYLYDV DDIIAAEGSM KGKQKLPHTE
301: QFRSLDKAAI RDQEAGVTSN VFNKWTLSTL TDVEEVKQIV RMLPIWATCI LFWTVHAQLT TLSVAQSETL DRSIGSFEIP PASMAVFYVG GLLLTTAVYD
401: RVAIRLCKKL FNYPHGLRPL QRIGLGLFFG SMAMAVAALV ELKRLRTAHA HGPTVKTLPL GFYLLIPQYL IVGIGEALIY TGQLDFFLRE CPKGMKGMST
501: GLLLSTLALG FFFSSVLVTI VEKFTGKAHP WIADDLNKGR LYNFYWLVAV LVALNFLIFL VFSKWYVYKE KRLAEVGIEL DDEPSIPMGH
Arabidopsis Description
NPF6.3NRT1.1 [Source:UniProtKB/TrEMBL;Acc:A0A178W8F7]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.