Subcellular Localization
min:
: max
Winner_takes_all: peroxisome
Predictor Summary:
Predictor Summary:
- peroxisome 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS2A01G251800.1 | |
| TraesCS2B01G271700.1 | |
| TraesCS2D01G252600.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G12110.1 | TraesCS2A01G251800.1 | AT1G30270.1 | 19766570 |
| AT1G12110.1 | TraesCS2B01G271700.1 | AT1G30270.1 | 19766570 |
| AT1G12110.1 | TraesCS2D01G252600.1 | AT1G30270.1 | 19766570 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G361500.1 | Wheat | peroxisome | 96.19 | 95.71 |
| TraesCS4B01G375800.1 | Wheat | plasma membrane | 95.69 | 95.06 |
| TraesCS5A01G537100.1 | Wheat | peroxisome | 95.02 | 94.09 |
| HORVU4Hr1G088020.4 | Barley | nucleus, plasma membrane | 93.53 | 90.82 |
| OQU93471 | Sorghum | plasma membrane | 76.78 | 76.53 |
| Zm00001d027285_P001 | Maize | cytosol, plasma membrane, vacuole | 76.12 | 76.5 |
| Os03t0103000-01 | Rice | cytosol, peroxisome, plasma membrane | 71.64 | 73.34 |
| TraesCS1B01G225000.1 | Wheat | plasma membrane | 69.32 | 70.25 |
| TraesCS1B01G224900.1 | Wheat | plasma membrane | 68.99 | 69.8 |
| GSMUA_Achr8P11190_001 | Banana | peroxisome | 64.68 | 69.03 |
| GSMUA_Achr8P11180_001 | Banana | peroxisome | 65.01 | 68.89 |
| GSMUA_Achr11P... | Banana | plasma membrane | 64.01 | 68.08 |
| TraesCS7B01G201900.1 | Wheat | plasma membrane | 64.84 | 64.84 |
| PGSC0003DMT400012226 | Potato | cytosol, peroxisome, plasma membrane | 62.85 | 64.24 |
| Solyc08g078950.2.1 | Tomato | cytosol, peroxisome, plasma membrane | 62.69 | 64.07 |
| GSMUA_Achr11P... | Banana | peroxisome | 59.54 | 63.77 |
| PGSC0003DMT400032493 | Potato | cytosol, peroxisome, plasma membrane | 61.03 | 62.37 |
| CDY30051 | Canola | cytosol, peroxisome, plasma membrane | 35.99 | 62.18 |
| Solyc08g007430.1.1 | Tomato | cytosol, peroxisome, plasma membrane | 60.7 | 62.03 |
| KRH04097 | Soybean | peroxisome | 60.7 | 61.62 |
| CDY69100 | Canola | plasma membrane | 33.83 | 61.45 |
| Bra019744.1-P | Field mustard | plasma membrane | 27.03 | 60.82 |
| VIT_02s0154g00260.t01 | Wine grape | plastid | 64.51 | 60.4 |
| KRH28055 | Soybean | plasma membrane | 58.04 | 59.73 |
| AT1G12110.1 | Thale cress | plasma membrane | 58.21 | 59.49 |
| CDY15967 | Canola | plasma membrane | 56.38 | 59.23 |
| KRH77380 | Soybean | cytosol, plasma membrane, plastid | 57.38 | 59.04 |
| Solyc06g060620.2.1 | Tomato | plasma membrane | 57.88 | 58.95 |
| Bra026991.1-P | Field mustard | plasma membrane | 57.55 | 58.91 |
| KRH57369 | Soybean | plasma membrane | 57.55 | 58.81 |
| CDY26539 | Canola | plasma membrane | 55.89 | 58.71 |
| Bra016789.1-P | Field mustard | plasma membrane | 57.38 | 58.64 |
| CDY21035 | Canola | plasma membrane | 55.72 | 58.43 |
| CDY31242 | Canola | plasma membrane | 55.72 | 58.43 |
| PGSC0003DMT400035882 | Potato | plasma membrane | 56.88 | 57.94 |
| TraesCS1B01G038700.1 | Wheat | peroxisome | 51.08 | 52.92 |
| TraesCS2B01G346100.1 | Wheat | plasma membrane | 46.77 | 49.91 |
| TraesCS5B01G414000.3 | Wheat | plasma membrane | 47.93 | 48.65 |
| TraesCS4B01G090800.1 | Wheat | golgi, peroxisome, plasma membrane | 35.32 | 35.26 |
| TraesCS2B01G326200.1 | Wheat | plasma membrane | 33.33 | 34.66 |
| TraesCS2B01G368700.1 | Wheat | plasma membrane | 30.85 | 33.27 |
| TraesCS3B01G095900.1 | Wheat | cytosol, peroxisome, plasma membrane, plastid | 35.49 | 32.92 |
| TraesCS5B01G060800.1 | Wheat | plasma membrane | 29.19 | 31.37 |
| TraesCS5B01G060500.1 | Wheat | plasma membrane | 28.86 | 31.07 |
| TraesCS7B01G262200.1 | Wheat | plasma membrane, plastid | 35.49 | 31.01 |
| TraesCS2B01G368600.2 | Wheat | plasma membrane | 29.02 | 30.12 |
| TraesCS2B01G277600.1 | Wheat | plasma membrane | 28.52 | 29.81 |
| TraesCS5B01G393100.1 | Wheat | plasma membrane | 22.39 | 27.95 |
| TraesCS2B01G368500.1 | Wheat | plasma membrane | 23.38 | 25.64 |
| TraesCS2B01G368400.1 | Wheat | plasma membrane | 23.22 | 25.45 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G371000.1 | EnsemblPlantsGene:TraesCS4B01G371000 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0006810 |
| GO:GO:0006857 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0022857 | GO:GO:0055085 | InterPro:MFS_trans_sf |
| InterPro:POT_fam | InterPro:PTR2_symporter_CS | PANTHER:PTHR11654 | PANTHER:PTHR11654:SF142 | PFAM:PF00854 | ScanProsite:PS01022 |
| SEG:seg | SUPFAM:SSF103473 | TMHMM:TMhelix | MapMan:24.2.2.9 | : | : |
Description
No Description!
Coordinates
chr4B:+:656821310..656828238
Molecular Weight (calculated)
64344.2 Da
IEP (calculated)
8.517
GRAVY (calculated)
0.368
Length
603 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPLPETTAQ AAAEDGGGDT SKALGDAWDY RGRPAVRASS GGWSSAAMIL GVELNERLTT LGIAVNLVTY LTAAMHLGNA ASANAVTNFL GTSFLLCLLG
101: GFVADTYLGR YLTIAISTAV QVAGMAVLTV STAAPGLRPA PCEDPTGDGS APGCAPPTGA QLGVLYLGLY LTALGTGGLK SSVSGFGSDQ FDESHAGERR
201: RMARFFGWFF FFISLGSLLA VTVLVYVQDN VGRRWGYGAC VVAILAGLGV FLAGTPRYRF KKLAGSPLTQ IAAVTAAAWR KRALPLPSDP AMLYDLDDAA
301: AAGEDVKGKR KLPHSKQCRF LDQAAIVEVE LEPSSGKKKK WAVCTVTEVE EVKQVVRMLP TWATTIIFWT VYAQMTTFSV SQAQSLDRRL GPSFVIPAGS
401: LTVFFVGSIL LTVPIYDRLI APLARRLTGN PQGLSPLQRI FVGLFLSILA MVVAGLTERH RLSASTAGVQ LSVFLIVPQF LLVGAGEAFT YIGQLDFFLC
501: ECPRDMKTMS TGLFLTTLSL GFFLSSGLVS IVHAVTTSDG RRPWLANDID KGRLDYFYWL LGAISTANLG IFIAAAKGYV YKEKRLADAG FIELHVEEVI
601: VHA
101: GFVADTYLGR YLTIAISTAV QVAGMAVLTV STAAPGLRPA PCEDPTGDGS APGCAPPTGA QLGVLYLGLY LTALGTGGLK SSVSGFGSDQ FDESHAGERR
201: RMARFFGWFF FFISLGSLLA VTVLVYVQDN VGRRWGYGAC VVAILAGLGV FLAGTPRYRF KKLAGSPLTQ IAAVTAAAWR KRALPLPSDP AMLYDLDDAA
301: AAGEDVKGKR KLPHSKQCRF LDQAAIVEVE LEPSSGKKKK WAVCTVTEVE EVKQVVRMLP TWATTIIFWT VYAQMTTFSV SQAQSLDRRL GPSFVIPAGS
401: LTVFFVGSIL LTVPIYDRLI APLARRLTGN PQGLSPLQRI FVGLFLSILA MVVAGLTERH RLSASTAGVQ LSVFLIVPQF LLVGAGEAFT YIGQLDFFLC
501: ECPRDMKTMS TGLFLTTLSL GFFLSSGLVS IVHAVTTSDG RRPWLANDID KGRLDYFYWL LGAISTANLG IFIAAAKGYV YKEKRLADAG FIELHVEEVI
601: VHA
001: MSLPETKSDD ILLDAWDFQG RPADRSKTGG WASAAMILCI EAVERLTTLG IGVNLVTYLT GTMHLGNATA ANTVTNFLGT SFMLCLLGGF IADTFLGRYL
101: TIAIFAAIQA TGVSILTLST IIPGLRPPRC NPTTSSHCEQ ASGIQLTVLY LALYLTALGT GGVKASVSGF GSDQFDETEP KERSKMTYFF NRFFFCINVG
201: SLLAVTVLVY VQDDVGRKWG YGICAFAIVL ALSVFLAGTN RYRFKKLIGS PMTQVAAVIV AAWRNRKLEL PADPSYLYDV DDIIAAEGSM KGKQKLPHTE
301: QFRSLDKAAI RDQEAGVTSN VFNKWTLSTL TDVEEVKQIV RMLPIWATCI LFWTVHAQLT TLSVAQSETL DRSIGSFEIP PASMAVFYVG GLLLTTAVYD
401: RVAIRLCKKL FNYPHGLRPL QRIGLGLFFG SMAMAVAALV ELKRLRTAHA HGPTVKTLPL GFYLLIPQYL IVGIGEALIY TGQLDFFLRE CPKGMKGMST
501: GLLLSTLALG FFFSSVLVTI VEKFTGKAHP WIADDLNKGR LYNFYWLVAV LVALNFLIFL VFSKWYVYKE KRLAEVGIEL DDEPSIPMGH
101: TIAIFAAIQA TGVSILTLST IIPGLRPPRC NPTTSSHCEQ ASGIQLTVLY LALYLTALGT GGVKASVSGF GSDQFDETEP KERSKMTYFF NRFFFCINVG
201: SLLAVTVLVY VQDDVGRKWG YGICAFAIVL ALSVFLAGTN RYRFKKLIGS PMTQVAAVIV AAWRNRKLEL PADPSYLYDV DDIIAAEGSM KGKQKLPHTE
301: QFRSLDKAAI RDQEAGVTSN VFNKWTLSTL TDVEEVKQIV RMLPIWATCI LFWTVHAQLT TLSVAQSETL DRSIGSFEIP PASMAVFYVG GLLLTTAVYD
401: RVAIRLCKKL FNYPHGLRPL QRIGLGLFFG SMAMAVAALV ELKRLRTAHA HGPTVKTLPL GFYLLIPQYL IVGIGEALIY TGQLDFFLRE CPKGMKGMST
501: GLLLSTLALG FFFSSVLVTI VEKFTGKAHP WIADDLNKGR LYNFYWLVAV LVALNFLIFL VFSKWYVYKE KRLAEVGIEL DDEPSIPMGH
Arabidopsis Description
NPF6.3NRT1.1 [Source:UniProtKB/TrEMBL;Acc:A0A178W8F7]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.