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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • cytosol 1
  • vacuole 3
  • peroxisome 1
  • extracellular 1
  • endoplasmic reticulum 1
  • plasma membrane 3
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, peroxisome, secretory
BaCelLo:cytosol
EpiLoc:vacuole
MultiLoc:peroxisome
Plant-mPloc:vacuole
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc02g021440.2.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G12110.1 Solyc02g021440.2.1 AT1G30270.1 19766570
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400035882 Potato plasma membrane 96.28 96.28
Solyc08g078950.2.1 Tomato cytosol, peroxisome, plasma membrane 76.52 76.78
Solyc08g007430.1.1 Tomato cytosol, peroxisome, plasma membrane 76.18 76.44
KRH04097 Soybean peroxisome 66.55 66.33
GSMUA_Achr11P... Banana plasma membrane 62.84 65.61
VIT_02s0154g00260.t01 Wine grape plastid 70.61 64.91
GSMUA_Achr8P11180_001 Banana peroxisome 62.16 64.67
GSMUA_Achr8P11190_001 Banana peroxisome 61.32 64.25
CDY30051 Canola cytosol, peroxisome, plasma membrane 37.5 63.61
KRH57369 Soybean plasma membrane 62.5 62.71
CDY21035 Canola plasma membrane 60.47 62.26
CDY31242 Canola plasma membrane 60.47 62.26
CDY15967 Canola plasma membrane 60.3 62.2
GSMUA_Achr1P20240_001 Banana plasma membrane 62.16 62.06
Bra016789.1-P Field mustard plasma membrane 61.66 61.86
CDY26539 Canola plasma membrane 59.8 61.67
GSMUA_AchrUn_... Banana cytosol, peroxisome, plasma membrane 60.81 61.64
GSMUA_Achr11P... Banana peroxisome 58.45 61.46
Os08t0155400-01 Rice plasma membrane 54.39 61.33
Bra026991.1-P Field mustard plasma membrane 60.98 61.29
TraesCS7B01G201900.1 Wheat plasma membrane 62.33 61.19
TraesCS7D01G297000.1 Wheat plasma membrane 62.33 61.19
EES13374 Sorghum plasma membrane 61.99 61.06
AT1G12110.1 Thale cress plasma membrane 60.64 60.85
TraesCS7A01G301700.1 Wheat plasma membrane 61.82 60.7
CDY69100 Canola plasma membrane 33.78 60.24
Bra019744.1-P Field mustard plasma membrane 27.2 60.07
Zm00001d024587_P001 Maize plasma membrane 61.49 59.87
Os03t0103000-01 Rice cytosol, peroxisome, plasma membrane 59.29 59.59
HORVU7Hr1G071600.2 Barley mitochondrion 62.33 59.42
Zm00001d029932_P001 Maize plasma membrane 59.46 59.16
TraesCS4D01G361500.1 Wheat peroxisome 60.47 59.08
Os10t0554200-02 Rice plasma membrane 59.46 59.06
TraesCS1B01G224900.1 Wheat plasma membrane 59.29 58.89
EER91957 Sorghum plasma membrane 59.12 58.82
TraesCS4B01G375800.1 Wheat plasma membrane 60.14 58.65
TraesCS5A01G537100.1 Wheat peroxisome 60.3 58.62
OQU93471 Sorghum plasma membrane 59.8 58.51
TraesCS1D01G214200.1 Wheat plasma membrane 58.61 58.22
TraesCS1A01G210900.1 Wheat plasma membrane 47.3 57.97
TraesCS4B01G371000.1 Wheat peroxisome 58.95 57.88
TraesCS1B01G225000.1 Wheat plasma membrane 58.11 57.82
TraesCS1A01G211000.1 Wheat cytosol 58.11 57.82
TraesCS1D01G214300.1 Wheat plasma membrane 57.94 57.65
Zm00001d027285_P001 Maize cytosol, plasma membrane, vacuole 58.28 57.5
HORVU4Hr1G088020.4 Barley nucleus, plasma membrane 60.3 57.49
Zm00001d029933_P001 Maize cytosol, peroxisome, plasma membrane 56.93 57.31
HORVU1Hr1G053990.4 Barley peroxisome 59.29 56.89
GSMUA_Achr6P36750_001 Banana plasma membrane 62.67 56.13
Solyc07g032490.2.1 Tomato plasma membrane 51.69 53.78
Solyc01g096880.2.1 Tomato plasma membrane 51.35 52.96
Solyc08g061020.1.1 Tomato plasma membrane 25.34 50.0
Solyc08g061010.2.1 Tomato plasma membrane 21.62 48.12
Solyc12g006050.1.1 Tomato cytosol, peroxisome, plasma membrane 47.8 47.8
Solyc07g049290.2.1 Tomato nucleus 46.28 46.36
HORVU1Hr1G054020.3 Barley mitochondrion, peroxisome, plastid 41.72 45.24
Solyc05g007000.2.1 Tomato plasma membrane 36.99 38.56
Solyc05g006990.2.1 Tomato endoplasmic reticulum, peroxisome, plasma membrane 36.15 36.52
Solyc04g005790.2.1 Tomato plasma membrane 35.64 36.32
Solyc04g079510.1.1 Tomato plasma membrane 34.12 35.38
Solyc01g103030.2.1 Tomato cytosol, peroxisome, plasma membrane 35.81 34.98
Solyc11g042820.1.1 Tomato peroxisome, plasma membrane, vacuole 34.29 34.23
Solyc04g079520.2.1 Tomato plasma membrane 33.45 34.02
Solyc03g005950.1.1 Tomato plasma membrane 35.3 33.33
Solyc04g079530.2.1 Tomato plasma membrane 32.43 33.16
Solyc10g039290.1.1 Tomato plasma membrane 31.25 32.34
Solyc01g102360.1.1 Tomato plasma membrane 32.6 31.69
Solyc03g113250.2.1 Tomato plasma membrane 31.42 30.49
Protein Annotations
Gene3D:1.20.1250.20MapMan:24.2.2.9GO:GO:0003674GO:GO:0005215GO:GO:0005575GO:GO:0006810
GO:GO:0006857GO:GO:0008150GO:GO:0016020GO:GO:0016021GO:GO:0022857GO:GO:0055085
InterPro:IPR020846UniProt:K4C6P2InterPro:MFS_domInterPro:MFS_trans_sfPFAM:PF00854InterPro:POT_fam
ScanProsite:PS01022ScanProsite:PS01023PANTHER:PTHR11654PANTHER:PTHR11654:SF78InterPro:PTR2_symporter_CSSUPFAM:SSF103473
EnsemblPlantsGene:Solyc06g060620.2EnsemblPlants:Solyc06g060620.2.1TMHMM:TMhelixUniParc:UPI000276637A::
Description
No Description!
Coordinates
chr6:+:38644635..38647717
Molecular Weight (calculated)
65233.4 Da
IEP (calculated)
9.560
GRAVY (calculated)
0.420
Length
592 amino acids
Sequence
(BLAST)
001: MALPHTQQET KVIPDAWDYK GRPALRSTSG GWAGAAMILG VEAVERLVTL GIAVNLVVYL TKTMHLGNAS AANIVTNFMG TSYILTLLGG YVADTFLGRY
101: LTVGIGATVQ AIGVTILTIS TIVPSLRPPK CDLGSPSCIP ADGKQLAVLF IALYMTALGT GFLKSSVSGF GTDQFDESDP KEKGRMIKFF SWFFFLINVG
201: ALTAVTVLVY IQDKVGRKFG YGICACAILV GLVFFLCGTK RYRFKKLVGS PLSQFASVFI AAWRKRHMNL PSDSSVLFNI DDIIGDENVK DKQKLPHSKE
301: FRFLDKAAIK DCSSEFSGTA ILNNWKLATL TDVEEVKLVI RMLPTWGTSI MFWTVYAQMT TFSVSQATTM DRHIGKSFEI PPASLTAFFV ASVMLVIIFY
401: DRVIVPLCAR YMNSPHGFTP LTRIAIGLVT SIFAMIAAAL TEIKRLNVAK SHGLINNPNA VIPMSVFWLV PQFLLVGGGE AFTYIGQLDF FLRECPKGMK
501: TMSTGLFIST ISLGFFFSSI LVSIVDKVTA KSRPWLADNL NQGKLYNFYW LLAILSVLNV ILFFYCAKRY VYKEKRLAEV GIQMEDSGPV CH
Best Arabidopsis Sequence Match ( AT1G12110.1 )
(BLAST)
001: MSLPETKSDD ILLDAWDFQG RPADRSKTGG WASAAMILCI EAVERLTTLG IGVNLVTYLT GTMHLGNATA ANTVTNFLGT SFMLCLLGGF IADTFLGRYL
101: TIAIFAAIQA TGVSILTLST IIPGLRPPRC NPTTSSHCEQ ASGIQLTVLY LALYLTALGT GGVKASVSGF GSDQFDETEP KERSKMTYFF NRFFFCINVG
201: SLLAVTVLVY VQDDVGRKWG YGICAFAIVL ALSVFLAGTN RYRFKKLIGS PMTQVAAVIV AAWRNRKLEL PADPSYLYDV DDIIAAEGSM KGKQKLPHTE
301: QFRSLDKAAI RDQEAGVTSN VFNKWTLSTL TDVEEVKQIV RMLPIWATCI LFWTVHAQLT TLSVAQSETL DRSIGSFEIP PASMAVFYVG GLLLTTAVYD
401: RVAIRLCKKL FNYPHGLRPL QRIGLGLFFG SMAMAVAALV ELKRLRTAHA HGPTVKTLPL GFYLLIPQYL IVGIGEALIY TGQLDFFLRE CPKGMKGMST
501: GLLLSTLALG FFFSSVLVTI VEKFTGKAHP WIADDLNKGR LYNFYWLVAV LVALNFLIFL VFSKWYVYKE KRLAEVGIEL DDEPSIPMGH
Arabidopsis Description
NPF6.3NRT1.1 [Source:UniProtKB/TrEMBL;Acc:A0A178W8F7]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.