Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- golgi 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS2A01G251800.1 | |
| TraesCS2B01G271700.1 | |
| TraesCS2D01G252600.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G12110.1 | TraesCS2A01G251800.1 | AT1G30270.1 | 19766570 |
| AT1G12110.1 | TraesCS2B01G271700.1 | AT1G30270.1 | 19766570 |
| AT1G12110.1 | TraesCS2D01G252600.1 | AT1G30270.1 | 19766570 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G224900.1 | Wheat | plasma membrane | 97.72 | 79.19 |
| TraesCS1D01G214200.1 | Wheat | plasma membrane | 97.1 | 78.69 |
| HORVU1Hr1G053990.4 | Barley | peroxisome | 96.48 | 75.53 |
| TraesCS1A01G211000.1 | Wheat | cytosol | 89.65 | 72.77 |
| Os10t0554200-02 | Rice | plasma membrane | 84.47 | 68.46 |
| Zm00001d029932_P001 | Maize | plasma membrane | 84.27 | 68.4 |
| EER91957 | Sorghum | plasma membrane | 84.06 | 68.24 |
| Zm00001d029933_P001 | Maize | cytosol, peroxisome, plasma membrane | 81.99 | 67.35 |
| TraesCS5A01G537100.1 | Wheat | peroxisome | 70.39 | 55.83 |
| GSMUA_Achr8P11190_001 | Banana | peroxisome | 62.32 | 53.27 |
| GSMUA_Achr11P... | Banana | plasma membrane | 62.32 | 53.09 |
| KRH28055 | Soybean | plasma membrane | 63.56 | 52.39 |
| GSMUA_Achr8P11180_001 | Banana | peroxisome | 61.28 | 52.02 |
| KRH77380 | Soybean | cytosol, plasma membrane, plastid | 62.73 | 51.71 |
| PGSC0003DMT400012226 | Potato | cytosol, peroxisome, plasma membrane | 62.73 | 51.36 |
| Solyc08g078950.2.1 | Tomato | cytosol, peroxisome, plasma membrane | 62.32 | 51.02 |
| TraesCS7A01G301700.1 | Wheat | plasma membrane | 63.56 | 50.91 |
| GSMUA_Achr11P... | Banana | peroxisome | 59.01 | 50.62 |
| PGSC0003DMT400032493 | Potato | cytosol, peroxisome, plasma membrane | 60.46 | 49.49 |
| Solyc08g007430.1.1 | Tomato | cytosol, peroxisome, plasma membrane | 60.25 | 49.32 |
| KRH04097 | Soybean | peroxisome | 59.42 | 48.32 |
| CDY15967 | Canola | plasma membrane | 56.52 | 47.56 |
| Bra026991.1-P | Field mustard | plasma membrane | 57.97 | 47.54 |
| AT1G12110.1 | Thale cress | plasma membrane | 57.97 | 47.46 |
| CDY26539 | Canola | plasma membrane | 56.31 | 47.39 |
| VIT_02s0154g00260.t01 | Wine grape | plastid | 63.15 | 47.36 |
| Solyc06g060620.2.1 | Tomato | plasma membrane | 57.97 | 47.3 |
| Bra016789.1-P | Field mustard | plasma membrane | 57.56 | 47.12 |
| KRH57369 | Soybean | plasma membrane | 57.56 | 47.12 |
| CDY21035 | Canola | plasma membrane | 55.69 | 46.78 |
| PGSC0003DMT400035882 | Potato | plasma membrane | 57.14 | 46.62 |
| CDY31242 | Canola | plasma membrane | 55.28 | 46.43 |
| CDY30051 | Canola | cytosol, peroxisome, plasma membrane | 29.61 | 40.97 |
| TraesCS1A01G031300.1 | Wheat | peroxisome | 46.79 | 38.83 |
| TraesCS5A01G409600.1 | Wheat | plasma membrane | 47.41 | 38.55 |
| CDY69100 | Canola | plasma membrane | 25.67 | 37.35 |
| TraesCS2A01G335800.1 | Wheat | mitochondrion | 46.38 | 37.02 |
| Bra019744.1-P | Field mustard | plasma membrane | 19.88 | 35.82 |
| TraesCS3A01G272600.1 | Wheat | plasma membrane | 34.16 | 30.96 |
| TraesCS7A01G365100.1 | Wheat | plasma membrane | 36.23 | 29.81 |
| TraesCS2A01G309100.1 | Wheat | plasma membrane | 33.95 | 28.28 |
| TraesCS4A01G225400.1 | Wheat | golgi, peroxisome, plasma membrane, plastid | 33.75 | 26.9 |
| TraesCS5A01G388000.1 | Wheat | plasma membrane | 32.09 | 26.63 |
| TraesCS2A01G350100.1 | Wheat | plasma membrane | 30.23 | 26.12 |
| TraesCS5A01G056100.1 | Wheat | plasma membrane | 25.67 | 26.11 |
| TraesCS2A01G350300.1 | Wheat | plasma membrane | 28.57 | 25.99 |
| TraesCS5A01G056200.2 | Wheat | plasma membrane | 30.02 | 25.8 |
| TraesCS3A01G081100.3 | Wheat | cytosol, peroxisome, plasma membrane, plastid | 32.71 | 25.12 |
| TraesCS2A01G264500.1 | Wheat | plasma membrane | 29.81 | 24.87 |
| TraesCS2A01G350000.1 | Wheat | plasma membrane | 25.88 | 23.11 |
Protein Annotations
| EnsemblPlants:TraesCS1A01G210900.1 | EnsemblPlantsGene:TraesCS1A01G210900 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0006810 |
| GO:GO:0008150 | GO:GO:0016020 | GO:GO:0022857 | GO:GO:0055085 | InterPro:MFS_trans_sf | InterPro:POT_fam |
| PANTHER:PTHR11654 | PANTHER:PTHR11654:SF136 | PFAM:PF00854 | SUPFAM:SSF103473 | TMHMM:TMhelix | MapMan:24.2.2.9 |
Description
No Description!
Coordinates
chr1A:+:373766720..373768534
Molecular Weight (calculated)
52324.1 Da
IEP (calculated)
7.957
GRAVY (calculated)
0.341
Length
483 amino acids
Sequence
(BLAST)
(BLAST)
001: MQGVMVLTIS TVAPGLRPAT CGDATGQSPD CVPANGTQLG VLYLGLYMTA LGTGGLKSSV SGFGSDQFDE SDDGERKKMM RFFNWFYFFV SIGALLAVTV
101: LVYVQDNIGR RWGYGICAVG ILCGLGVFLC GTKMYRFKKL VGSPLTQVAA VTTAAWSKRT LPLPSDPSML YDVDDAAAAG EDLKGKQKLP HSKECRFLDH
201: AAIIDRAEAA SPAEASKWAL CTRTDVEEVK QVVRMLPIWA TTIMFWTIHA QMTTFAVEQA SLMDRGIGGS GFLIPAGSLT VFLIGSILLT VPLYDRLISP
301: VARRITGNPH GLSPLQRVFV GLFLSIVGMA AAAIVERHRL TSSTHGVTLT VFLLMPQFLL VGAGEAFTYM GQLDFFLREC PKGMKTMSTG LFLSTCALGF
401: FFSTVTVTIV HKVTGHGPRG SGGWLADNLD QGRLDYFYWL LAVMSAINII FFTMAARGYV YKEKRLADAG IELADEEAMI VGH
101: LVYVQDNIGR RWGYGICAVG ILCGLGVFLC GTKMYRFKKL VGSPLTQVAA VTTAAWSKRT LPLPSDPSML YDVDDAAAAG EDLKGKQKLP HSKECRFLDH
201: AAIIDRAEAA SPAEASKWAL CTRTDVEEVK QVVRMLPIWA TTIMFWTIHA QMTTFAVEQA SLMDRGIGGS GFLIPAGSLT VFLIGSILLT VPLYDRLISP
301: VARRITGNPH GLSPLQRVFV GLFLSIVGMA AAAIVERHRL TSSTHGVTLT VFLLMPQFLL VGAGEAFTYM GQLDFFLREC PKGMKTMSTG LFLSTCALGF
401: FFSTVTVTIV HKVTGHGPRG SGGWLADNLD QGRLDYFYWL LAVMSAINII FFTMAARGYV YKEKRLADAG IELADEEAMI VGH
001: MSLPETKSDD ILLDAWDFQG RPADRSKTGG WASAAMILCI EAVERLTTLG IGVNLVTYLT GTMHLGNATA ANTVTNFLGT SFMLCLLGGF IADTFLGRYL
101: TIAIFAAIQA TGVSILTLST IIPGLRPPRC NPTTSSHCEQ ASGIQLTVLY LALYLTALGT GGVKASVSGF GSDQFDETEP KERSKMTYFF NRFFFCINVG
201: SLLAVTVLVY VQDDVGRKWG YGICAFAIVL ALSVFLAGTN RYRFKKLIGS PMTQVAAVIV AAWRNRKLEL PADPSYLYDV DDIIAAEGSM KGKQKLPHTE
301: QFRSLDKAAI RDQEAGVTSN VFNKWTLSTL TDVEEVKQIV RMLPIWATCI LFWTVHAQLT TLSVAQSETL DRSIGSFEIP PASMAVFYVG GLLLTTAVYD
401: RVAIRLCKKL FNYPHGLRPL QRIGLGLFFG SMAMAVAALV ELKRLRTAHA HGPTVKTLPL GFYLLIPQYL IVGIGEALIY TGQLDFFLRE CPKGMKGMST
501: GLLLSTLALG FFFSSVLVTI VEKFTGKAHP WIADDLNKGR LYNFYWLVAV LVALNFLIFL VFSKWYVYKE KRLAEVGIEL DDEPSIPMGH
101: TIAIFAAIQA TGVSILTLST IIPGLRPPRC NPTTSSHCEQ ASGIQLTVLY LALYLTALGT GGVKASVSGF GSDQFDETEP KERSKMTYFF NRFFFCINVG
201: SLLAVTVLVY VQDDVGRKWG YGICAFAIVL ALSVFLAGTN RYRFKKLIGS PMTQVAAVIV AAWRNRKLEL PADPSYLYDV DDIIAAEGSM KGKQKLPHTE
301: QFRSLDKAAI RDQEAGVTSN VFNKWTLSTL TDVEEVKQIV RMLPIWATCI LFWTVHAQLT TLSVAQSETL DRSIGSFEIP PASMAVFYVG GLLLTTAVYD
401: RVAIRLCKKL FNYPHGLRPL QRIGLGLFFG SMAMAVAALV ELKRLRTAHA HGPTVKTLPL GFYLLIPQYL IVGIGEALIY TGQLDFFLRE CPKGMKGMST
501: GLLLSTLALG FFFSSVLVTI VEKFTGKAHP WIADDLNKGR LYNFYWLVAV LVALNFLIFL VFSKWYVYKE KRLAEVGIEL DDEPSIPMGH
Arabidopsis Description
NPF6.3NRT1.1 [Source:UniProtKB/TrEMBL;Acc:A0A178W8F7]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.