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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:
  • cytosol 2
  • plastid 1
  • vacuole 2
  • extracellular 1
  • endoplasmic reticulum 1
  • plasma membrane 2
  • golgi 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, peroxisome, plasma membrane
Any Predictor:cytosol, peroxisome, plastid, secretory
BaCelLo:cytosol
EpiLoc:plastid
MultiLoc:cytosol
Plant-mPloc:vacuole
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:peroxisome
PPI

Inferred distinct locusB in Crop

locusBlocations
PGSC0003DMT400080484

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G12110.1 PGSC0003DMT400080484 AT1G30270.1 19766570
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc08g078950.2.1 Tomato cytosol, peroxisome, plasma membrane 97.29 97.29
PGSC0003DMT400032493 Potato cytosol, peroxisome, plasma membrane 84.58 84.58
PGSC0003DMT400035882 Potato plasma membrane 77.12 76.86
VIT_02s0154g00260.t01 Wine grape plastid 78.81 72.2
GSMUA_Achr11P... Banana plasma membrane 68.98 71.78
GSMUA_Achr8P11180_001 Banana peroxisome 69.15 71.7
CDY30051 Canola cytosol, peroxisome, plasma membrane 42.37 71.63
GSMUA_Achr8P11190_001 Banana peroxisome 67.8 70.8
KRH04097 Soybean peroxisome 71.02 70.54
CDY31242 Canola plasma membrane 66.44 68.17
CDY15967 Canola plasma membrane 66.27 68.12
EES13374 Sorghum plasma membrane 69.32 68.05
CDY21035 Canola plasma membrane 66.1 67.83
Bra016789.1-P Field mustard plasma membrane 67.8 67.8
Bra026991.1-P Field mustard plasma membrane 67.46 67.57
Bra019744.1-P Field mustard plasma membrane 30.68 67.54
CDY69100 Canola plasma membrane 37.97 67.47
Os08t0155400-01 Rice plasma membrane 60.0 67.43
CDY26539 Canola plasma membrane 65.59 67.42
GSMUA_Achr1P20240_001 Banana plasma membrane 67.63 67.28
AT1G12110.1 Thale cress plasma membrane 66.95 66.95
TraesCS7B01G201900.1 Wheat plasma membrane 68.14 66.67
TraesCS7D01G297000.1 Wheat plasma membrane 67.97 66.5
KRH57369 Soybean plasma membrane 66.44 66.44
TraesCS7A01G301700.1 Wheat plasma membrane 67.63 66.17
Zm00001d024587_P001 Maize plasma membrane 68.14 66.12
GSMUA_Achr11P... Banana peroxisome 63.05 66.07
GSMUA_AchrUn_... Banana cytosol, peroxisome, plasma membrane 65.08 65.75
HORVU7Hr1G071600.2 Barley mitochondrion 67.97 64.57
EER91957 Sorghum plasma membrane 64.75 64.2
Os10t0554200-02 Rice plasma membrane 64.75 64.09
TraesCS1B01G225000.1 Wheat plasma membrane 64.41 63.87
TraesCS1A01G211000.1 Wheat cytosol 64.41 63.87
OQU93471 Sorghum plasma membrane 65.42 63.8
TraesCS1D01G214200.1 Wheat plasma membrane 64.41 63.76
TraesCS1B01G224900.1 Wheat plasma membrane 64.41 63.76
TraesCS4B01G375800.1 Wheat plasma membrane 65.59 63.76
TraesCS1D01G214300.1 Wheat plasma membrane 64.24 63.7
TraesCS4D01G361500.1 Wheat peroxisome 65.42 63.7
TraesCS5A01G537100.1 Wheat peroxisome 65.59 63.55
Zm00001d027285_P001 Maize cytosol, plasma membrane, vacuole 64.41 63.33
Zm00001d029932_P001 Maize plasma membrane 63.73 63.19
Os03t0103000-01 Rice cytosol, peroxisome, plasma membrane 62.88 62.99
Zm00001d029933_P001 Maize cytosol, peroxisome, plasma membrane 62.71 62.93
TraesCS4B01G371000.1 Wheat peroxisome 64.24 62.85
TraesCS1A01G210900.1 Wheat plasma membrane 51.36 62.73
HORVU1Hr1G053990.4 Barley peroxisome 64.58 61.75
HORVU4Hr1G088020.4 Barley nucleus, plasma membrane 64.75 61.51
GSMUA_Achr6P36750_001 Banana plasma membrane 68.81 61.42
PGSC0003DMT400075163 Potato plasma membrane 54.75 55.69
PGSC0003DMT400070732 Potato plasma membrane 54.07 55.48
PGSC0003DMT400053569 Potato endoplasmic reticulum, plasma membrane 23.73 52.63
PGSC0003DMT400010957 Potato cytosol, peroxisome, plasma membrane 51.02 50.84
HORVU1Hr1G054020.3 Barley mitochondrion, peroxisome, plastid 46.95 50.73
PGSC0003DMT400001784 Potato cytosol, peroxisome, plasma membrane 50.68 50.42
PGSC0003DMT400045415 Potato plasma membrane 38.14 39.13
PGSC0003DMT400007441 Potato plasma membrane 37.63 38.01
PGSC0003DMT400030534 Potato plasma membrane 36.78 37.09
PGSC0003DMT400030530 Potato mitochondrion 21.69 36.47
PGSC0003DMT400082762 Potato plasma membrane 27.63 36.06
PGSC0003DMT400030533 Potato plasma membrane 35.42 35.91
PGSC0003DMT400053373 Potato cytosol, peroxisome, plasma membrane 36.78 35.87
PGSC0003DMT400065182 Potato plasma membrane 35.42 35.48
PGSC0003DMT400045412 Potato mitochondrion 37.46 35.25
PGSC0003DMT400011063 Potato cytosol 33.9 34.31
PGSC0003DMT400072037 Potato cytosol, peroxisome, plasma membrane 36.44 32.92
PGSC0003DMT400046950 Potato plasma membrane 33.73 32.57
PGSC0003DMT400071504 Potato plasma membrane 32.88 32.5
PGSC0003DMT400054593 Potato plasma membrane 32.71 31.43
Protein Annotations
Gene3D:1.20.1250.20EntrezGene:102606337MapMan:24.2.2.9GO:GO:0003674GO:GO:0005215GO:GO:0005575
GO:GO:0006810GO:GO:0006857GO:GO:0008150GO:GO:0016020GO:GO:0016021GO:GO:0022857
GO:GO:0055085UniProt:M1A0X7InterPro:MFS_trans_sfPFAM:PF00854EnsemblPlantsGene:PGSC0003DMG400004795PGSC:PGSC0003DMG400004795
EnsemblPlants:PGSC0003DMT400012226InterPro:POT_famScanProsite:PS01022ScanProsite:PS01023PANTHER:PTHR11654PANTHER:PTHR11654:SF78
InterPro:PTR2_symporter_CSSUPFAM:SSF103473TMHMM:TMhelixUniParc:UPI000295AC38RefSeq:XP_006355480.1SEG:seg
Description
Nitrate transporter [Source:PGSC_GENE;Acc:PGSC0003DMG400004795]
Coordinates
chr8:+:52567376..52571923
Molecular Weight (calculated)
65175.2 Da
IEP (calculated)
9.403
GRAVY (calculated)
0.337
Length
590 amino acids
Sequence
(BLAST)
001: MSLPETQHDT KTLPDAWDYK GRPALRSSSG GWSSAAMILG IEAVERLTTL GIAVNLVTYL TGTMHLGNAN SANNVTNFLG TSFMLTLLGG FVADTFLGRY
101: LTIGIFTTIQ AMGVTILTIS TIIPSLRPPK CEPGSSTCIP ASGKQLMVLY IALYMTALGT GGLKSSVSGF GSDQFDETDK KERGQMIKFF NWFFFFINVG
201: SLGAVTILVY IQDNLGREWG YGICACAIVI GLVIFLSGTR KYRFKKLVGS PLTQIASVFV AALRKKHLEL PSDPSLLFNI DDIPGDGNKK AKQRLPHSKE
301: YRFLDKAAIK VNDLESAGFT VVNKWNLSTL TDVEEVKLVV RMLPTWATTI MFWTVYAQMT TFSVSQATTM DRHIGKFEIP PASLTLFFVG SILVTCVFYD
401: RVVVPIAKRV LNNPQGLSPL QRIAVGLVLS IIAMIAAALT EVKRLNVAHL HGLTNDANAM IPLSVFWLVP QFLLVGAGEA FTYIGQLDFF LRECPKGMKT
501: MSTGLFLSTL SLGFFFSSIL VTIVHKVTGK KPWLADNLNQ GKLYDFYWLL AILSVFNLMI FLFFSRRYVY KEKRLAEVGI EMEDSEPACH
Best Arabidopsis Sequence Match ( AT1G12110.1 )
(BLAST)
001: MSLPETKSDD ILLDAWDFQG RPADRSKTGG WASAAMILCI EAVERLTTLG IGVNLVTYLT GTMHLGNATA ANTVTNFLGT SFMLCLLGGF IADTFLGRYL
101: TIAIFAAIQA TGVSILTLST IIPGLRPPRC NPTTSSHCEQ ASGIQLTVLY LALYLTALGT GGVKASVSGF GSDQFDETEP KERSKMTYFF NRFFFCINVG
201: SLLAVTVLVY VQDDVGRKWG YGICAFAIVL ALSVFLAGTN RYRFKKLIGS PMTQVAAVIV AAWRNRKLEL PADPSYLYDV DDIIAAEGSM KGKQKLPHTE
301: QFRSLDKAAI RDQEAGVTSN VFNKWTLSTL TDVEEVKQIV RMLPIWATCI LFWTVHAQLT TLSVAQSETL DRSIGSFEIP PASMAVFYVG GLLLTTAVYD
401: RVAIRLCKKL FNYPHGLRPL QRIGLGLFFG SMAMAVAALV ELKRLRTAHA HGPTVKTLPL GFYLLIPQYL IVGIGEALIY TGQLDFFLRE CPKGMKGMST
501: GLLLSTLALG FFFSSVLVTI VEKFTGKAHP WIADDLNKGR LYNFYWLVAV LVALNFLIFL VFSKWYVYKE KRLAEVGIEL DDEPSIPMGH
Arabidopsis Description
NPF6.3NRT1.1 [Source:UniProtKB/TrEMBL;Acc:A0A178W8F7]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.