Factsheet for GSMUA_Achr6P36750_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 1
plastid 1
peroxisome 1
plasma membrane 4
vacuole 2
extracellular 1
endoplasmic reticulum 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, peroxisome, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	plastid
MultiLoc:	peroxisome
Plant-mPloc:	plasma membrane, vacuole
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr4P23000_001
GSMUA_Achr4P31540_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12110.1	GSMUA_Achr4P23000_001	AT1G30270.1	19766570
AT1G12110.1	GSMUA_Achr4P31540_001	AT1G30270.1	19766570

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P20240_001	Banana	plasma membrane	74.28	82.8
GSMUA_AchrUn_...	Banana	cytosol, peroxisome, plasma membrane	70.5	79.79
GSMUA_Achr8P11190_001	Banana	peroxisome	65.81	76.99
GSMUA_Achr8P11180_001	Banana	peroxisome	66.26	76.98
GSMUA_Achr11P...	Banana	plasma membrane	64.75	75.48
Os08t0155400-01	Rice	plasma membrane	58.25	73.33
EES13374	Sorghum	plasma membrane	66.57	73.21
TraesCS7D01G297000.1	Wheat	plasma membrane	65.81	72.14
TraesCS7B01G201900.1	Wheat	plasma membrane	65.66	71.97
TraesCS7A01G301700.1	Wheat	plasma membrane	65.66	71.97
GSMUA_Achr11P...	Banana	peroxisome	60.82	71.4
Zm00001d024587_P001	Maize	plasma membrane	65.2	70.89
HORVU7Hr1G071600.2	Barley	mitochondrion	65.36	69.57
CDY30051	Canola	cytosol, peroxisome, plasma membrane	36.46	69.05
PGSC0003DMT400012226	Potato	cytosol, peroxisome, plasma membrane	61.42	68.81
Solyc08g078950.2.1	Tomato	cytosol, peroxisome, plasma membrane	61.27	68.64
Bra019744.1-P	Field mustard	plasma membrane	27.38	67.54
KRH04097	Soybean	peroxisome	59.61	66.33
CDY69100	Canola	plasma membrane	33.28	66.27
KRH28055	Soybean	plasma membrane	57.64	65.02
PGSC0003DMT400032493	Potato	cytosol, peroxisome, plasma membrane	57.94	64.92
VIT_02s0154g00260.t01	Wine grape	plastid	63.09	64.75
KRH77380	Soybean	cytosol, plasma membrane, plastid	57.34	64.68
Solyc08g007430.1.1	Tomato	cytosol, peroxisome, plasma membrane	57.64	64.58
KRH57369	Soybean	plasma membrane	56.28	63.05
Solyc06g060620.2.1	Tomato	plasma membrane	56.13	62.67
CDY31242	Canola	plasma membrane	54.16	62.26
CDY21035	Canola	plasma membrane	54.16	62.26
CDY15967	Canola	plasma membrane	53.71	61.85
Bra016789.1-P	Field mustard	plasma membrane	55.07	61.69
AT1G12110.1	Thale cress	plasma membrane	54.92	61.53
PGSC0003DMT400035882	Potato	plasma membrane	55.07	61.49
CDY26539	Canola	plasma membrane	53.25	61.32
Bra026991.1-P	Field mustard	plasma membrane	54.31	60.95
GSMUA_Achr6P05170_001	Banana	plasma membrane	49.32	56.3
GSMUA_Achr3P05990_001	Banana	cytosol, plasma membrane, plastid	43.42	50.0
GSMUA_Achr9P14440_001	Banana	plasma membrane	15.28	49.75
GSMUA_Achr7P08300_001	Banana	plasma membrane	50.08	49.18
GSMUA_Achr4P30700_001	Banana	plasma membrane	49.02	47.16
GSMUA_Achr7P08880_001	Banana	plasma membrane	30.71	36.71
GSMUA_Achr10P...	Banana	plasma membrane	30.11	35.28
GSMUA_Achr2P16840_001	Banana	plasma membrane, plastid	31.32	34.33
GSMUA_Achr5P16920_001	Banana	plasma membrane	28.59	33.93
GSMUA_Achr8P08410_001	Banana	plasma membrane	30.11	33.79
GSMUA_Achr6P07370_001	Banana	plasma membrane	28.44	33.57
GSMUA_Achr6P00820_001	Banana	plasma membrane	31.62	33.07
GSMUA_Achr6P29080_001	Banana	plasma membrane	29.2	32.71
GSMUA_Achr9P08330_001	Banana	plasma membrane	28.59	32.36
GSMUA_Achr9P01100_001	Banana	cytosol, peroxisome, plasma membrane	28.44	31.6
GSMUA_AchrUn_...	Banana	plasma membrane	8.62	30.81
GSMUA_Achr8P29280_001	Banana	plasma membrane	27.38	28.41
GSMUA_Achr11P...	Banana	plasma membrane	23.6	23.6

Protein Annotations

Gene3D:1.20.1250.20	MapMan:24.2.2.9	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810
GO:GO:0006857	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0022857	GO:GO:0055085
EnsemblPlantsGene:GSMUA_Achr6G36750_001	EnsemblPlants:GSMUA_Achr6P36750_001	EnsemblPlants:GSMUA_Achr6T36750_001	UniProt:M0TDB5	InterPro:MFS_trans_sf	PFAM:PF00854
InterPro:POT_fam	ScanProsite:PS01022	PANTHER:PTHR11654	PANTHER:PTHR11654:SF78	InterPro:PTR2_symporter_CS	SUPFAM:SSF103473
TMHMM:TMhelix	UniParc:UPI000295E452	SEG:seg	:	:	:

Description

Nitrate transporter 1.1 [Source:GMGC_GENE;Acc:GSMUA_Achr6G36750_001]

Coordinates

chr6:+:34700226..34704259

Molecular Weight (calculated)

71438.9 Da

IEP (calculated)

8.594

GRAVY (calculated)

0.224

Length

661 amino acids

Sequence
(BLAST)

001: MVGLPETDDI LSDAWDYKGR PAVRSRTGVW SGAAMILGMY PNLNLLTTLG IAVNLVTYLT GTMHLGNAAS ANTVTNFMGT SFMLCLLGGF VADTFLGRYL
101: TIAIFAAVQA SGVSILTIST AVPGLRPPAC ADPASGGCVK ASGAQLGVLY LALYLTALGT GGLKSSVSGF GSDQFDETDR GEKAQMMKFF NWFFFFISLG
201: SLLAVTVLVY IQDNLGRQWG YGVCATAIAL GLVVFLSGTR RYRFKKLVGS PLTQIAAVVA AAWRKRGLEL PSDPSLLHDI DEKQADADAE KGSKRSKAKQ
301: RVPHTKQFRP PTAGFSCDKR GAMDSGNISQ DPGHGSTPLC VGRCIPPSCL WKPCTTNRAG SRESCRHQEE VDRRMETPVY HGCCVELIMK GQSYFLDKAA
401: IDVDPGAKQG KRWLPTLTDV EEVKIVIRML PIWATTIMFW TVYAQMTTFS VSQATTMDRR IGPSFRIPPG SLTVFFVGSI LLTRIGAGLV LSILAMSAAA
501: LTEIKRLGVA RSTPAALENG ATVPMSVFWL IPQFFLVGAG EAFTYIGQLD FFLRECPKGM KTMSTGLFLS TLSLGFFVSS ALVTVVHKVT GESGHGAWLA
601: DNLNRGKLYN FYWLLAVLCL VNLVAYLVVA RWYAYKEQRA AVDDDSNAGV ELTEDAACCH A

Best Arabidopsis Sequence Match ( AT1G12110.1 )
(BLAST)

001: MSLPETKSDD ILLDAWDFQG RPADRSKTGG WASAAMILCI EAVERLTTLG IGVNLVTYLT GTMHLGNATA ANTVTNFLGT SFMLCLLGGF IADTFLGRYL
101: TIAIFAAIQA TGVSILTLST IIPGLRPPRC NPTTSSHCEQ ASGIQLTVLY LALYLTALGT GGVKASVSGF GSDQFDETEP KERSKMTYFF NRFFFCINVG
201: SLLAVTVLVY VQDDVGRKWG YGICAFAIVL ALSVFLAGTN RYRFKKLIGS PMTQVAAVIV AAWRNRKLEL PADPSYLYDV DDIIAAEGSM KGKQKLPHTE
301: QFRSLDKAAI RDQEAGVTSN VFNKWTLSTL TDVEEVKQIV RMLPIWATCI LFWTVHAQLT TLSVAQSETL DRSIGSFEIP PASMAVFYVG GLLLTTAVYD
401: RVAIRLCKKL FNYPHGLRPL QRIGLGLFFG SMAMAVAALV ELKRLRTAHA HGPTVKTLPL GFYLLIPQYL IVGIGEALIY TGQLDFFLRE CPKGMKGMST
501: GLLLSTLALG FFFSSVLVTI VEKFTGKAHP WIADDLNKGR LYNFYWLVAV LVALNFLIFL VFSKWYVYKE KRLAEVGIEL DDEPSIPMGH

Arabidopsis Description

NPF6.3NRT1.1 [Source:UniProtKB/TrEMBL;Acc:A0A178W8F7]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.