Factsheet for Zm00001d024587_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

peroxisome 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 3
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	peroxisome, secretory
MultiLoc:	peroxisome
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

plasma membrane: 23508561
mitochondrion: 27297264
plasma membrane: 27341663

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 23508561 doi

Z Zhang, P Voothuluru, M Yamaguchi, RE Sharp, SC Peck

Division of Biochemistry, University of Missouri Columbia, MO, USA ; Christopher S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA ; Interdisciplinary Plant Group, University of Missouri Columbia, MO, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d018799_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12110.1	Zm00001d018799_P001	AT1G30270.1	19766570

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES13374	Sorghum	plasma membrane	92.76	93.84
Os08t0155400-01	Rice	plasma membrane	74.67	86.48
TraesCS7A01G301700.1	Wheat	plasma membrane	84.87	85.57
TraesCS7B01G201900.1	Wheat	plasma membrane	84.87	85.57
TraesCS7D01G297000.1	Wheat	plasma membrane	84.87	85.57
HORVU7Hr1G071600.2	Barley	mitochondrion	84.54	82.77
GSMUA_AchrUn_...	Banana	cytosol, peroxisome, plasma membrane	70.72	73.63
GSMUA_Achr1P20240_001	Banana	plasma membrane	67.93	69.65
CDY30051	Canola	cytosol, peroxisome, plasma membrane	39.14	68.19
PGSC0003DMT400012226	Potato	cytosol, peroxisome, plasma membrane	66.12	68.14
Solyc08g078950.2.1	Tomato	cytosol, peroxisome, plasma membrane	65.95	67.97
Zm00001d029932_P001	Maize	plasma membrane	66.28	67.73
Zm00001d027285_P001	Maize	cytosol, plasma membrane, vacuole	65.95	66.83
Zm00001d029933_P001	Maize	cytosol, peroxisome, plasma membrane	64.31	66.5
PGSC0003DMT400032493	Potato	cytosol, peroxisome, plasma membrane	63.82	65.76
CDY69100	Canola	plasma membrane	35.69	65.36
KRH28055	Soybean	plasma membrane	62.99	65.36
KRH04097	Soybean	peroxisome	63.82	65.32
Bra019744.1-P	Field mustard	plasma membrane	28.78	65.3
GSMUA_Achr6P36750_001	Banana	plasma membrane	70.89	65.2
Solyc08g007430.1.1	Tomato	cytosol, peroxisome, plasma membrane	63.16	65.08
KRH77380	Soybean	cytosol, plasma membrane, plastid	62.5	64.85
VIT_02s0154g00260.t01	Wine grape	plastid	68.59	64.75
AT1G12110.1	Thale cress	plasma membrane	61.35	63.22
CDY15967	Canola	plasma membrane	59.38	62.89
Bra016789.1-P	Field mustard	plasma membrane	61.02	62.88
CDY21035	Canola	plasma membrane	59.38	62.78
Bra026991.1-P	Field mustard	plasma membrane	60.69	62.65
CDY26539	Canola	plasma membrane	58.88	62.37
CDY31242	Canola	plasma membrane	58.88	62.26
KRH57369	Soybean	plasma membrane	60.2	62.03
Solyc06g060620.2.1	Tomato	plasma membrane	59.87	61.49
PGSC0003DMT400035882	Potato	plasma membrane	59.38	60.98
Zm00001d044529_P001	Maize	cytosol, peroxisome, plasma membrane	53.29	54.82
Zm00001d009399_P001	Maize	cytosol, peroxisome, plasma membrane	51.97	53.47
Zm00001d016982_P001	Maize	plasma membrane	50.33	51.34
Zm00001d036942_P001	Maize	plasma membrane	34.21	38.52
Zm00001d046383_P001	Maize	plasma membrane	37.5	38.51
Zm00001d043463_P001	Maize	plasma membrane	34.21	38.03
Zm00001d003603_P001	Maize	plasma membrane	36.18	37.29
Zm00001d036941_P001	Maize	plasma membrane	37.34	37.27
Zm00001d041163_P001	Maize	plasma membrane	34.21	36.11
Zm00001d003208_P001	Maize	plasma membrane	26.64	35.29
Zm00001d007255_P001	Maize	plasma membrane	35.86	34.99
Zm00001d004621_P001	Maize	plasma membrane	27.96	34.98
Zm00001d040201_P001	Maize	plasma membrane	35.86	32.98
Zm00001d049349_P001	Maize	mitochondrion	35.86	30.4
Zm00001d025748_P001	Maize	plasma membrane	25.82	28.6

Protein Annotations

MapMan:24.2.2.9	ProteinID:AQK41533.1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810
GO:GO:0006857	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0022857	GO:GO:0055085
UniProt:K7THW9	InterPro:MFS_trans_sf	PFAM:PF00854	InterPro:POT_fam	ScanProsite:PS01022	PANTHER:PTHR11654
PANTHER:PTHR11654:SF78	InterPro:PTR2_symporter_CS	SUPFAM:SSF103473	TMHMM:TMhelix	UniParc:UPI0002218E3A	EnsemblPlantsGene:Zm00001d024587
EnsemblPlants:Zm00001d024587_P001	EnsemblPlants:Zm00001d024587_T001	SEG:seg	:	:	:

Description

nitrate transporter/peptide transporter family1Protein NRT1/ PTR FAMILY 6.3

Coordinates

chr10:+:79465955..79472158

Molecular Weight (calculated)

65165.2 Da

IEP (calculated)

9.589

GRAVY (calculated)

0.331

Length

608 amino acids

Sequence
(BLAST)

001: MVGLLPETNA AAETDVLLDA WDFKGRPAPR ATTGRWGAAA MILVAELNER LTTLGIAVNL VTYLTGTMHL GNAESANVVT NFMGTSFMLC LLGGFVADSF
101: LGRYLTIAIF TAVQASGVTI LTISTAAPGL RPASCSATGG GVVGECARAS GAQLGVLYLA LYLTALGTGG LKSSVSGFGS DQFDESDGGE KRQMMRFFNW
201: FFFFISLGSL LAVTVLVYVQ DNLGRRWGYG ACACAIAAGL LVFLAGTRRY RFKKLAGSPL TQIAAVVVAA WRKRRLPLPA DPAMLYDVDV GKAAAVEDGS
301: SSKKSKRKER LPHTDQFRFL DHAAINEDPA AGASSSSKWR LATLTDVEEV KTVARMLPIW ATTIMFWTVY AQMTTFSVSQ ATTMDRRVGG SFQIPAGSLT
401: VFFVGSILLT VPVYDRLVVP VARRVSGNPH GLTPLQRIAV GLALSVVAMA GAALTEVRRL RVARDSSESA SGGVVPMSVF WLIPQFFLVG AGEAFTYIGQ
501: LDFFLRECPK GMKTMSTGLF LSTLSLGFFV SSALVAAVHR VTGDRHPWIA NDLNKGRLDN FYWLLAAVCL ANLLVYLVAA RWYKYKAGRP GADGSVNGVE
601: MADEPTLH

Best Arabidopsis Sequence Match ( AT1G12110.1 )
(BLAST)

001: MSLPETKSDD ILLDAWDFQG RPADRSKTGG WASAAMILCI EAVERLTTLG IGVNLVTYLT GTMHLGNATA ANTVTNFLGT SFMLCLLGGF IADTFLGRYL
101: TIAIFAAIQA TGVSILTLST IIPGLRPPRC NPTTSSHCEQ ASGIQLTVLY LALYLTALGT GGVKASVSGF GSDQFDETEP KERSKMTYFF NRFFFCINVG
201: SLLAVTVLVY VQDDVGRKWG YGICAFAIVL ALSVFLAGTN RYRFKKLIGS PMTQVAAVIV AAWRNRKLEL PADPSYLYDV DDIIAAEGSM KGKQKLPHTE
301: QFRSLDKAAI RDQEAGVTSN VFNKWTLSTL TDVEEVKQIV RMLPIWATCI LFWTVHAQLT TLSVAQSETL DRSIGSFEIP PASMAVFYVG GLLLTTAVYD
401: RVAIRLCKKL FNYPHGLRPL QRIGLGLFFG SMAMAVAALV ELKRLRTAHA HGPTVKTLPL GFYLLIPQYL IVGIGEALIY TGQLDFFLRE CPKGMKGMST
501: GLLLSTLALG FFFSSVLVTI VEKFTGKAHP WIADDLNKGR LYNFYWLVAV LVALNFLIFL VFSKWYVYKE KRLAEVGIEL DDEPSIPMGH

Arabidopsis Description

NPF6.3NRT1.1 [Source:UniProtKB/TrEMBL;Acc:A0A178W8F7]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.