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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • plastid 1
  • cytosol 1
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 3
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, plasma membrane, plastid
BaCelLo:plastid
MultiLoc:cytosol
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX90240
CDY26276
CDY49976
CDY63182

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G12110.1 CDX90240 AT1G30270.1 19766570
AT1G12110.1 CDY26276 AT1G30270.1 19766570
AT1G12110.1 CDY49976 AT1G30270.1 19766570
AT1G12110.1 CDY63182 AT1G30270.1 19766570
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra019744.1-P Field mustard plasma membrane 73.8 91.42
CDY30051 Canola cytosol, peroxisome, plasma membrane 87.05 82.81
CDY21035 Canola plasma membrane 91.57 52.87
CDY31242 Canola plasma membrane 91.27 52.7
CDY15967 Canola plasma membrane 90.06 52.09
CDY26539 Canola plasma membrane 88.86 51.39
AT1G12110.1 Thale cress plasma membrane 89.46 50.34
CDY40277 Canola plasma membrane 30.12 39.22
GSMUA_Achr8P11180_001 Banana peroxisome 65.66 38.31
Solyc08g078950.2.1 Tomato cytosol, peroxisome, plasma membrane 67.47 37.97
PGSC0003DMT400012226 Potato cytosol, peroxisome, plasma membrane 67.47 37.97
GSMUA_Achr11P... Banana plasma membrane 64.46 37.74
GSMUA_Achr8P11190_001 Banana peroxisome 64.16 37.7
PGSC0003DMT400032493 Potato cytosol, peroxisome, plasma membrane 66.87 37.63
Solyc08g007430.1.1 Tomato cytosol, peroxisome, plasma membrane 66.27 37.29
GSMUA_Achr1P20240_001 Banana plasma membrane 66.57 37.27
GSMUA_AchrUn_... Banana cytosol, peroxisome, plasma membrane 64.46 36.64
KRH28055 Soybean plasma membrane 63.55 36.01
TraesCS7D01G297000.1 Wheat plasma membrane 65.36 35.99
EES13374 Sorghum plasma membrane 65.06 35.94
TraesCS7B01G201900.1 Wheat plasma membrane 65.06 35.82
TraesCS7A01G301700.1 Wheat plasma membrane 65.06 35.82
Zm00001d024587_P001 Maize plasma membrane 65.36 35.69
KRH77380 Soybean cytosol, plasma membrane, plastid 62.95 35.67
GSMUA_Achr11P... Banana peroxisome 59.64 35.17
HORVU7Hr1G071600.2 Barley mitochondrion 65.36 34.94
Os10t0554200-02 Rice plasma membrane 62.65 34.9
Zm00001d029932_P001 Maize plasma membrane 62.05 34.62
Zm00001d029933_P001 Maize cytosol, peroxisome, plasma membrane 61.14 34.52
EER91957 Sorghum plasma membrane 61.75 34.45
TraesCS4D01G361500.1 Wheat peroxisome 62.65 34.32
VIT_02s0154g00260.t01 Wine grape plastid 66.57 34.32
TraesCS1B01G225000.1 Wheat plasma membrane 61.45 34.29
TraesCS1B01G224900.1 Wheat plasma membrane 61.45 34.23
TraesCS1D01G214200.1 Wheat plasma membrane 61.14 34.06
TraesCS5A01G537100.1 Wheat peroxisome 62.35 33.99
TraesCS1A01G211000.1 Wheat cytosol 60.84 33.95
TraesCS1D01G214300.1 Wheat plasma membrane 60.84 33.95
Zm00001d027285_P001 Maize cytosol, plasma membrane, vacuole 61.14 33.83
TraesCS4B01G371000.1 Wheat peroxisome 61.45 33.83
Os03t0103000-01 Rice cytosol, peroxisome, plasma membrane 59.94 33.79
Solyc06g060620.2.1 Tomato plasma membrane 60.24 33.78
KRH04097 Soybean peroxisome 60.24 33.67
TraesCS4B01G375800.1 Wheat plasma membrane 61.45 33.61
OQU93471 Sorghum plasma membrane 61.14 33.55
PGSC0003DMT400035882 Potato plasma membrane 59.64 33.45
GSMUA_Achr6P36750_001 Banana plasma membrane 66.27 33.28
HORVU1Hr1G053990.4 Barley peroxisome 61.45 33.06
HORVU4Hr1G088020.4 Barley nucleus, plasma membrane 61.14 32.69
Os08t0155400-01 Rice plasma membrane 51.2 32.38
KRH57369 Soybean plasma membrane 56.63 31.86
CDY44319 Canola plasma membrane 43.37 30.57
CDY38629 Canola plasma membrane 43.37 30.06
CDY70795 Canola plasma membrane 28.31 29.75
CDY67653 Canola peroxisome 31.93 29.2
CDY45207 Canola golgi, plasma membrane 51.51 29.13
CDX71495 Canola plasma membrane 51.51 28.5
CDY30787 Canola mitochondrion 51.51 28.45
TraesCS1A01G210900.1 Wheat plasma membrane 37.35 25.67
CDY04575 Canola plasma membrane 34.04 21.81
CDY15763 Canola plasma membrane 31.33 21.27
CDY52284 Canola plasma membrane 32.23 20.78
CDY52286 Canola plasma membrane 32.23 20.74
CDY40278 Canola plasma membrane 34.34 19.52
CDY50182 Canola plasma membrane 34.34 19.39
CDY28437 Canola plasma membrane 34.04 19.35
CDX93764 Canola plasma membrane 34.94 19.33
CDY11649 Canola cytosol, peroxisome, plasma membrane 33.73 18.82
CDX91126 Canola plastid 34.94 18.65
CDX85654 Canola cytosol, plasma membrane, plastid 34.94 18.65
CDX84348 Canola plasma membrane 31.63 18.62
HORVU1Hr1G054020.3 Barley mitochondrion, peroxisome, plastid 30.42 18.5
CDY15100 Canola plasma membrane 32.53 18.49
CDY00323 Canola plasma membrane 31.33 18.44
CDY38765 Canola plasma membrane 33.73 17.23
CDY45893 Canola golgi, peroxisome, plasma membrane 21.39 14.88
CDY65523 Canola plastid 6.63 6.79
CDY45147 Canola mitochondrion 6.33 6.33
Protein Annotations
Gene3D:1.20.1250.20MapMan:24.2.2.9GO:A0A078JRP9UniProt:A0A078JRP9EnsemblPlants:CDY69100ProteinID:CDY69100
ProteinID:CDY69100.1GO:GO:0003674GO:GO:0005215GO:GO:0005575GO:GO:0006810GO:GO:0006857
GO:GO:0008150GO:GO:0016020GO:GO:0016021GO:GO:0022857GO:GO:0055085EnsemblPlantsGene:GSBRNA2T00083058001
InterPro:MFS_trans_sfPFAM:PF00854InterPro:POT_famScanProsite:PS01022ScanProsite:PS01023PANTHER:PTHR11654
PANTHER:PTHR11654:SF78InterPro:PTR2_symporter_CSSUPFAM:SSF103473TMHMM:TMhelixUniParc:UPI0004EE03B0SEG:seg
Description
BnaCnng61860DBnaCnng61860D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JRP9]
Coordinates
chrLK038656:-:1140..2633
Molecular Weight (calculated)
36692.7 Da
IEP (calculated)
8.998
GRAVY (calculated)
0.264
Length
332 amino acids
Sequence
(BLAST)
001: MSLPETKSQT LLDAWDFQGR PADRSKTGGW TSAAMILCIE AVERLTTLGI GVNLVTYLTG TMHLGNATAA NTVTNFLGTS FMLCLLGGFI ADTFLGRYLT
101: IAIFAAIQAT GVSILTLSTI IPGLQPPRCN PTTSSHCVQA SGIQLTVLYL ALYLTALGTG GVKASVSGFG SDQFDETEPK EQSQMTYFFN RFFFCINVGS
201: LLAVTVLVYM QDDVGRKWGY GLCAFSIVLA LSIFLAGTNR YRFKKLIGSP MTQVAAVIVA AWRNRRLELP SDPSYLYDLD DVIAAENSMK SKQKLPHTKQ
301: FRYYFYCLIG CFIFINLKHF TQRNKSHLYL RL
Best Arabidopsis Sequence Match ( AT1G12110.1 )
(BLAST)
001: MSLPETKSDD ILLDAWDFQG RPADRSKTGG WASAAMILCI EAVERLTTLG IGVNLVTYLT GTMHLGNATA ANTVTNFLGT SFMLCLLGGF IADTFLGRYL
101: TIAIFAAIQA TGVSILTLST IIPGLRPPRC NPTTSSHCEQ ASGIQLTVLY LALYLTALGT GGVKASVSGF GSDQFDETEP KERSKMTYFF NRFFFCINVG
201: SLLAVTVLVY VQDDVGRKWG YGICAFAIVL ALSVFLAGTN RYRFKKLIGS PMTQVAAVIV AAWRNRKLEL PADPSYLYDV DDIIAAEGSM KGKQKLPHTE
301: QFRSLDKAAI RDQEAGVTSN VFNKWTLSTL TDVEEVKQIV RMLPIWATCI LFWTVHAQLT TLSVAQSETL DRSIGSFEIP PASMAVFYVG GLLLTTAVYD
401: RVAIRLCKKL FNYPHGLRPL QRIGLGLFFG SMAMAVAALV ELKRLRTAHA HGPTVKTLPL GFYLLIPQYL IVGIGEALIY TGQLDFFLRE CPKGMKGMST
501: GLLLSTLALG FFFSSVLVTI VEKFTGKAHP WIADDLNKGR LYNFYWLVAV LVALNFLIFL VFSKWYVYKE KRLAEVGIEL DDEPSIPMGH
Arabidopsis Description
NPF6.3NRT1.1 [Source:UniProtKB/TrEMBL;Acc:A0A178W8F7]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.