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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:
  • nucleus 1
  • plastid 1
  • cytosol 1
  • vacuole 2
  • extracellular 1
  • endoplasmic reticulum 1
  • plasma membrane 2
  • golgi 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, peroxisome, plasma membrane
Any Predictor:cytosol, nucleus, peroxisome, plastid, secretory
BaCelLo:nucleus
EpiLoc:plastid
MultiLoc:cytosol
Plant-mPloc:vacuole
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:peroxisome
PPI

Inferred distinct locusB in Crop

locusBlocations
Os07t0150700-01

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G12110.1 Os07t0150700-01 AT1G30270.1 19766570
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS4D01G361500.1 Wheat peroxisome 73.85 71.78
TraesCS4B01G371000.1 Wheat peroxisome 73.34 71.64
TraesCS4B01G375800.1 Wheat plasma membrane 73.68 71.5
TraesCS5A01G537100.1 Wheat peroxisome 73.85 71.43
OQU93471 Sorghum plasma membrane 72.84 70.91
Zm00001d027285_P001 Maize cytosol, plasma membrane, vacuole 71.65 70.33
HORVU4Hr1G088020.4 Barley nucleus, plasma membrane 73.85 70.05
GSMUA_Achr8P11190_001 Banana peroxisome 65.03 67.79
GSMUA_Achr8P11180_001 Banana peroxisome 65.2 67.49
Os10t0554200-02 Rice plasma membrane 67.74 66.95
GSMUA_Achr11P... Banana plasma membrane 64.18 66.67
Os08t0155400-01 Rice plasma membrane 57.22 64.19
PGSC0003DMT400012226 Potato cytosol, peroxisome, plasma membrane 62.99 62.88
Solyc08g078950.2.1 Tomato cytosol, peroxisome, plasma membrane 62.99 62.88
GSMUA_Achr11P... Banana peroxisome 59.93 62.7
CDY30051 Canola cytosol, peroxisome, plasma membrane 37.01 62.46
PGSC0003DMT400032493 Potato cytosol, peroxisome, plasma membrane 61.97 61.86
Solyc08g007430.1.1 Tomato cytosol, peroxisome, plasma membrane 61.8 61.69
KRH04097 Soybean peroxisome 60.78 60.27
Bra019744.1-P Field mustard plasma membrane 27.33 60.07
KRH28055 Soybean plasma membrane 59.76 60.07
CDY69100 Canola plasma membrane 33.79 59.94
KRH77380 Soybean cytosol, plasma membrane, plastid 59.25 59.56
Solyc06g060620.2.1 Tomato plasma membrane 59.59 59.29
VIT_02s0154g00260.t01 Wine grape plastid 64.69 59.16
PGSC0003DMT400035882 Potato plasma membrane 59.08 58.78
CDY15967 Canola plasma membrane 57.22 58.71
Bra026991.1-P Field mustard plasma membrane 58.4 58.4
CDY26539 Canola plasma membrane 56.88 58.36
CDY31242 Canola plasma membrane 56.2 57.57
Bra016789.1-P Field mustard plasma membrane 57.56 57.46
KRH57369 Soybean plasma membrane 57.56 57.46
CDY21035 Canola plasma membrane 56.03 57.39
AT1G12110.1 Thale cress plasma membrane 57.39 57.29
Os02t0580900-01 Rice plasma membrane 48.39 46.8
Os06t0581000-01 Rice plasma membrane 35.48 35.42
Os04t0441800-01 Rice plasma membrane 36.67 35.35
Os01t0103100-01 Rice plasma membrane 35.82 34.82
Os11t0235200-01 Rice plasma membrane 35.65 33.55
Os04t0491500-02 Rice plasma membrane 30.56 32.32
Os12t0231000-01 Rice plasma membrane 31.58 31.9
Os04t0464400-00 Rice peroxisome, plasma membrane 32.6 30.82
Os11t0282800-00 Rice plasma membrane 31.07 30.35
Os11t0283500-01 Rice plasma membrane 29.71 30.02
Os11t0284300-00 Rice mitochondrion 15.96 29.84
Os04t0491200-00 Rice plasma membrane, vacuole 20.37 18.32
Os04t0491350-00 Rice plasma membrane 0.34 0.43
Os01t0749000-02 Rice cytosol, plastid 0.0 0.0
Protein Annotations
MapMan:24.2.2.9EntrezGene:9271131ProteinID:ABF93501.1EMBL:AK241823ProteinID:BAS81842.1ProteinID:EEE64490.1
GO:GO:0003674GO:GO:0005215GO:GO:0005575GO:GO:0006810GO:GO:0006857GO:GO:0008150
GO:GO:0016020GO:GO:0016021GO:GO:0022857GO:GO:0055085InterPro:MFS_trans_sfEnsemblPlantsGene:Os03g0103000
EnsemblPlants:Os03t0103000-01PFAM:PF00854InterPro:POT_famScanProsite:PS01022PANTHER:PTHR11654PANTHER:PTHR11654:SF142
InterPro:PTR2_symporter_CSUniProt:Q10T28SUPFAM:SSF103473TMHMM:TMhelixUniParc:UPI0000DB409DRefSeq:XP_015632236.1
SEG:seg:::::
Description
nitrate transporter 1.1CSimilar to Nitrate transporter. (Os03t0103000-01)
Coordinates
chr3:+:202527..205750
Molecular Weight (calculated)
63969.0 Da
IEP (calculated)
8.949
GRAVY (calculated)
0.362
Length
589 amino acids
Sequence
(BLAST)
001: MAVAARVVEE EDPDVVEMMK RRDDEEEVVG EAWDYKGRGA IRGSTGGWRS AAMILCVELN ERLTTLGVAV NLVTYLTGTM HLGSAASANA VTNFLGTSFM
101: LCLLGGFLAD TYLGRYLTIA IFTAVQAAGM AVLTISTAAP GLRPPPCSSG GSGCAAANGT QLGVLYLGLY MTALGTGGLK SSVSGFGSDQ FDESDGGERG
201: SMARFFSWFF FFISMGSLLA VTVLVYVQDK VGRRWGYGIC VVAILTGLLF FLAGTTTYRF KKLLGSPLTQ IAAVTAAAWT NRNLPLPSDP SMLNHDDSAH
301: TTAKPNQKLP HSKQFRFLDH AAIVETTTAE AKKRKRWAAC CTVTEVEEVK QLVRMLPTWA TTILFWTVYA QMTTFSVSQA AVMDRRLSTS FVIPAGSLTV
401: FFVAAILLTV PLYYRLLAPL VRRLTANPRY DLSPLHRIFV GLLLAALAMV AAALTERARR DAAVTLSVFY LLPQFLLVGA GEAFTYIGQL DFFLRECPKG
501: MKTMSTGLFL STLSLGFFFS TALVTVVHKV TAESRRPWLA DNLDEGRLDN FYWLLGGISV VNLAVFVAAA ARGYVYREKR LADAGIIHI
Best Arabidopsis Sequence Match ( AT1G12110.1 )
(BLAST)
001: MSLPETKSDD ILLDAWDFQG RPADRSKTGG WASAAMILCI EAVERLTTLG IGVNLVTYLT GTMHLGNATA ANTVTNFLGT SFMLCLLGGF IADTFLGRYL
101: TIAIFAAIQA TGVSILTLST IIPGLRPPRC NPTTSSHCEQ ASGIQLTVLY LALYLTALGT GGVKASVSGF GSDQFDETEP KERSKMTYFF NRFFFCINVG
201: SLLAVTVLVY VQDDVGRKWG YGICAFAIVL ALSVFLAGTN RYRFKKLIGS PMTQVAAVIV AAWRNRKLEL PADPSYLYDV DDIIAAEGSM KGKQKLPHTE
301: QFRSLDKAAI RDQEAGVTSN VFNKWTLSTL TDVEEVKQIV RMLPIWATCI LFWTVHAQLT TLSVAQSETL DRSIGSFEIP PASMAVFYVG GLLLTTAVYD
401: RVAIRLCKKL FNYPHGLRPL QRIGLGLFFG SMAMAVAALV ELKRLRTAHA HGPTVKTLPL GFYLLIPQYL IVGIGEALIY TGQLDFFLRE CPKGMKGMST
501: GLLLSTLALG FFFSSVLVTI VEKFTGKAHP WIADDLNKGR LYNFYWLVAV LVALNFLIFL VFSKWYVYKE KRLAEVGIEL DDEPSIPMGH
Arabidopsis Description
NPF6.3NRT1.1 [Source:UniProtKB/TrEMBL;Acc:A0A178W8F7]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.