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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • cytosol 1
  • plasma membrane 4
  • vacuole 2
  • extracellular 1
  • endoplasmic reticulum 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, nucleus, secretory
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:plasma membrane, vacuole
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
 plasma membrane: 19154200
gfp PMID: 19154200 doi
S Li, Q Qian, Z Fu, D Zeng, X Meng, J Kyozuka, M Maekawa, X Zhu, J Zhang, J Li, Y Wang
National Center for Plant Gene Research, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
OQU83190 Sorghum plasma membrane 76.04 84.1
HORVU4Hr1G015640.2 Barley golgi, peroxisome, plasma membrane 80.51 83.58
TraesCS4A01G225400.1 Wheat golgi, peroxisome, plasma membrane, plastid 80.83 83.5
TraesCS4D01G087900.1 Wheat golgi, peroxisome, plasma membrane 80.67 83.47
TraesCS4B01G090800.1 Wheat golgi, peroxisome, plasma membrane 80.51 83.44
Zm00001d007255_P001 Maize plasma membrane 77.64 78.01
GSMUA_Achr10P... Banana plasma membrane 66.29 73.58
GSMUA_Achr6P07370_001 Banana plasma membrane 64.54 72.14
GSMUA_Achr5P16920_001 Banana plasma membrane 64.06 71.99
GSMUA_Achr9P08330_001 Banana plasma membrane 65.34 70.03
GSMUA_AchrUn_... Banana plasma membrane 20.45 69.19
GSMUA_Achr6P29080_001 Banana plasma membrane 65.02 68.98
Os04t0441800-01 Rice plasma membrane 66.29 67.92
Solyc11g042820.1.1 Tomato peroxisome, plasma membrane, vacuole 62.62 66.1
CDX93764 Canola plasma membrane 63.1 65.83
Bra028002.1-P Field mustard peroxisome 62.94 65.67
CDY50182 Canola plasma membrane 61.66 65.65
AT1G33440.1 Thale cress plasma membrane 62.46 65.06
PGSC0003DMT400082762 Potato plasma membrane 45.53 63.05
GSMUA_Achr8P29280_001 Banana plasma membrane 63.26 62.17
VIT_18s0089g01010.t01 Wine grape plasma membrane 66.93 46.3
Os06t0581000-01 Rice plasma membrane 36.9 39.15
Os08t0155400-01 Rice plasma membrane 32.75 39.05
Os04t0491500-02 Rice plasma membrane 32.59 36.62
Os10t0554200-02 Rice plasma membrane 34.66 36.41
Os12t0231000-01 Rice plasma membrane 33.71 36.19
Os02t0580900-01 Rice plasma membrane 34.82 35.8
Os03t0103000-01 Rice cytosol, peroxisome, plasma membrane 33.55 35.65
Os11t0283500-01 Rice plasma membrane 31.63 33.96
Os11t0282800-00 Rice plasma membrane 32.11 33.33
Os11t0284300-00 Rice mitochondrion 16.61 33.02
Os01t0103100-01 Rice plasma membrane 29.39 30.36
Os04t0464400-00 Rice peroxisome, plasma membrane 23.32 23.43
Os04t0491200-00 Rice plasma membrane, vacuole 20.77 19.85
Os04t0491350-00 Rice plasma membrane 0.32 0.43
Os01t0749000-02 Rice cytosol, plastid 0.0 0.0
Protein Annotations
MapMan:24.2.2.9EntrezGene:4350145ProteinID:AAX95189.1ProteinID:ABA92279.1EMBL:AK100802ProteinID:BAT13347.1
GO:GO:0003674GO:GO:0005215GO:GO:0005575GO:GO:0005623GO:GO:0005886GO:GO:0006810
GO:GO:0008150GO:GO:0016020GO:GO:0016021GO:GO:0022857GO:GO:0055085InterPro:MFS_trans_sf
EnsemblPlantsGene:Os11g0235200EnsemblPlants:Os11t0235200-01PFAM:PF00854InterPro:POT_famPANTHER:PTHR11654PANTHER:PTHR11654:SF198
UniProt:Q53JI5SUPFAM:SSF103473TMHMM:TMhelixUniParc:UPI000050970DRefSeq:XP_015615524.1SEG:seg
Description
SHORT PANICLE 1Peptide transporter (PTR) family transporter, Proton oligopeptide tansporter (POT), Panicle elongation (Os11t0235200-01)
Coordinates
chr11:-:7193230..7198486
Molecular Weight (calculated)
66068.0 Da
IEP (calculated)
6.878
GRAVY (calculated)
0.366
Length
626 amino acids
Sequence
(BLAST)
001: MDVESRQGPK GGDTMAASEV SVDWRGRPCG SRKHGGMKAA VFVLGIQAFE MMAIAAVGNN LITYVFNEMH YPLSKSANIV TNFIGTVFLL SLLGGFLSDS
101: YLGSFWTMLI FGFVELSGFI LLAVQAHLPQ LRPPACDMMA AAAAEGGCEE ASGVKAGIFF AALYLVALGS GCLKPNIIAH GADQFRRGGG GGGDGDGDDG
201: GDGKRLSSYF NAAYFSFCVG ELVALTVLVW VQTRSGMDVG FGVSAAAMAV GLVSLVAGVF FYRNKPPQGS IFMPIAKVFV AAVTKRKQVC PSSSSTTAAS
301: HAVIPATGAA PVHRINKFRF LDKACVKVQD GHGGGGDGGK ESVWPPCTPA EVEQVKVLLC VVPIFACTIV FNTILAQLQT FSVQQGSAMD TRIGGGGGGA
401: AFHIPPASLQ AIPYLVLIAL VPAYEACFVP AMRRATGVDT GITPLQRIGV GLFAVTFSMV AAALVEAHRR RHAGDGLLSI FWIAPQFLVF GVSEMFTAVG
501: LIEFFYKQSL SGMQAFLTSM TYCSYSFGFY LSSLLVSLVN KVTSGDGAGA GGGGWLSDND LNKDRLDLFY WLLAGLSLLN FFNYLFWSRW YSKSVETTVQ
601: VAGVGGEGGG GEQQEEKGVD EVNMGH
Best Arabidopsis Sequence Match ( AT1G33440.1 )
(BLAST)
001: MDVHDLSEEA KRGVIHTSEE SLDDLCVDFR GRPCRPSKHG GTRAALFVLG FQAFEMMAIA AVGNNLITYV FNEMHFPLSK SANLVTNFIG TVFLLSLLGG
101: FLSDSYLGSF RTMLVFGVIE ISGFILLSVQ AHLPELRPPE CNMKSTTIHC VEANGYKAAT LYTALCLVAL GSGCLKPNII SHGANQFQRK DLRKLSSFFN
201: AAYFAFSMGQ LIALTLLVWV QTHSGMDVGF GVSAAVMAAG MISLVAGTSF YRNKPPSGSI FTPIAQVFVA AITKRKQICP SNPNMVHQPS TDLVRVKPLL
301: HSNKFRFLDK ACIKTQGKAM ESPWRLCTIE QVHQVKILLS VIPIFACTII FNTILAQLQT FSVQQGSSMN THITKTFQIP PASLQAIPYI ILIFFVPLYE
401: TFFVPLARKL TGNDSGISPL QRIGTGLFLA TFSMVAAALV EKKRRESFLE QNVMLSIFWI APQFLIFGLS EMFTAVGLVE FFYKQSSQSM QSFLTAMTYC
501: SYSFGFYLSS VLVSTVNRVT SSNGSGTKEG WLGDNDLNKD RLDHFYWLLA SLSFINFFNY LFWSRWYSCD PSATHHSAEV NSLEALENGE IKDSTTEKPR
601: I
Arabidopsis Description
NPF4.4Protein NRT1/ PTR FAMILY 4.4 [Source:UniProtKB/Swiss-Prot;Acc:Q56XQ6]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.