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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • golgi 2
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 3
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:golgi, nucleus, plasma membrane
BaCelLo:nucleus
MultiLoc:golgi
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d007255_P001 Maize plasma membrane 91.17 82.83
TraesCS4B01G090800.1 Wheat golgi, peroxisome, plasma membrane 83.57 78.31
TraesCS4D01G087900.1 Wheat golgi, peroxisome, plasma membrane 83.39 78.02
TraesCS4A01G225400.1 Wheat golgi, peroxisome, plasma membrane, plastid 83.39 77.89
HORVU4Hr1G015640.2 Barley golgi, peroxisome, plasma membrane 82.86 77.78
Os11t0235200-01 Rice plasma membrane 84.1 76.04
GSMUA_AchrUn_... Banana plasma membrane 23.5 71.89
GSMUA_Achr10P... Banana plasma membrane 68.73 68.97
GSMUA_Achr5P16920_001 Banana plasma membrane 66.96 68.04
GSMUA_Achr6P07370_001 Banana plasma membrane 67.14 67.86
EES12219 Sorghum plasma membrane 69.08 66.38
GSMUA_Achr9P08330_001 Banana plasma membrane 68.02 65.92
GSMUA_Achr6P29080_001 Banana plasma membrane 67.84 65.08
Solyc11g042820.1.1 Tomato peroxisome, plasma membrane, vacuole 66.96 63.91
CDX93764 Canola plasma membrane 65.9 62.17
Bra028002.1-P Field mustard peroxisome 65.72 62.0
CDY50182 Canola plasma membrane 64.13 61.73
AT1G33440.1 Thale cress plasma membrane 65.37 61.56
PGSC0003DMT400082762 Potato plasma membrane 47.35 59.29
GSMUA_Achr8P29280_001 Banana plasma membrane 66.43 59.03
KXG24751 Sorghum peroxisome, plasma membrane, vacuole 60.6 56.98
VIT_18s0089g01010.t01 Wine grape plasma membrane 69.79 43.65
OQU81850 Sorghum plasma membrane 34.98 36.0
EER89980 Sorghum plasma membrane 38.16 35.88
OQU87541 Sorghum cytosol, peroxisome, plasma membrane 38.16 35.24
EES15875 Sorghum plasma membrane 35.34 35.15
OQU81851 Sorghum plasma membrane 34.63 34.81
EES15876 Sorghum plasma membrane 34.45 34.7
EES05323 Sorghum plasma membrane 36.57 34.67
EER91957 Sorghum plasma membrane 36.22 34.45
EES15877 Sorghum plasma membrane 34.81 34.44
KXG28299 Sorghum plasma membrane 34.81 34.14
KXG32694 Sorghum cytosol 35.34 34.07
EES14657 Sorghum plasma membrane 34.28 34.04
EES13374 Sorghum plasma membrane 35.51 33.44
KXG26617 Sorghum plasma membrane 34.63 33.28
EES11151 Sorghum plasma membrane 33.57 32.65
OQU93471 Sorghum plasma membrane 34.81 32.56
OQU83318 Sorghum mitochondrion, plasma membrane 28.8 31.77
EES12425 Sorghum plasma membrane 28.09 29.23
EES00465 Sorghum plastid 31.1 26.39
EES19057 Sorghum plastid 10.78 24.4
Protein Annotations
Gene3D:1.20.1250.20MapMan:24.2.2.9UniProt:A0A1Z5RHF2GO:GO:0003674GO:GO:0005215GO:GO:0005575
GO:GO:0005623GO:GO:0005886GO:GO:0006810GO:GO:0008150GO:GO:0016020GO:GO:0016021
GO:GO:0022857GO:GO:0055085InterPro:MFS_trans_sfEnsemblPlants:OQU83190ProteinID:OQU83190ProteinID:OQU83190.1
PFAM:PF00854InterPro:POT_famPANTHER:PTHR11654PANTHER:PTHR11654:SF198EnsemblPlantsGene:SORBI_3005G090600SUPFAM:SSF103473
TMHMM:TMhelixUniParc:UPI000B8BA590SEG:seg:::
Description
hypothetical protein
Coordinates
chr5:+:13319227..13324295
Molecular Weight (calculated)
60335.3 Da
IEP (calculated)
7.651
GRAVY (calculated)
0.490
Length
566 amino acids
Sequence
(BLAST)
001: MDVESRQGSK GDAMAAAAAA VSVDWRGRTC DPVKHGGMKA AVFVLGIQAF EMMAIAAVGN NLITYVFGEM HFPLSEAANI VTNFIGTVFL LSLLGGFLSD
101: SYLGSFWTML IFGFVELSGF ILLAVQAHLP QLRPPPCDMM AAAGQACEQA SGLKAGIFFA ALYLVALGSG CLKPNIIAHG ADQFRRGSAG DARRLSSYFN
201: AAYFSFCVGE LVALTVLVWV QTRSGMDVGF GVSAAAMAIG LLSLVAGVAF YRNKPPQGSI FTPIAKACVK APDSTGGSSA GTKESPWRLC TPAEVEQVKL
301: LLCVVPIFAC TIVFNTILAQ LQTFSVQQGS AMDTRLAASG FHVPPASLQA IPYIMLVALV PAYEAAFVPA MRRLTGVATG ITPLQRIGVG LFAVTFSMVA
401: AALVEARRRH AADGGRLLSI FWIAPQFLVF GLSEMFTAVG LIEFFYKQSL AGMQAFLTSM TYCSYSFGFY LSSVLVSLVN RITSSSTSTA GNGGGGWLAN
501: NDLNKDRLDL FYWLLAALSI LNFFNYLFWA RWYSRSVERV QVVGVGSGGG AGEQDDEKDT LNAETN
Best Arabidopsis Sequence Match ( AT1G59740.1 )
(BLAST)
001: MAEINKQSNK WEQEEVSNEN NWELAEEESV DWRGRPSNPN KHGGMRAALF VLGLQAFEIM GIAAVGNNLI TYVINEMHFP LSKAANIVTN FVGTIFIFAL
101: LGGYLSDAFL GSFWTIIIFG FVELSGFILL SVQAHLPQLK PPKCNPLIDQ TCEEAKGFKA MIFFMALYLV ALGSGCVKPN MIAHGADQFS QSHPKQSKRL
201: SSYFNAAYFA FSMGELIALT LLVWVQTHSG MDIGFGVSAA AMTMGIISLV SGTMYFRNKR PRRSIFTPIA HVIVAAILKR KLASPSDPRM LHGDHHVAND
301: VVPSSTLPHT PRFRFLDKAC IKIQDTNTKE SPWRLCTVTQ VEQVKTLISL VPIFASTIVF NTILAQLQTF SVQQGSSMNT RLSNSFHIPP ASLQAIPYIM
401: LIFLVPLYDS FLVPFARKLT GHNSGIPPLT RIGIGLFLST FSMVSAAMLE KKRRDSSVLD GRILSIFWIT PQFLIFGISE MFTAVGLIEF FYKQSAKGME
501: SFLMALTYCS YSFGFYFSSV LVSVVNKITS TSVDSKGWLG ENDLNKDRLD LFYWLLAVLS LLNFLSYLFW SRWNIKSSRR NNTNVVGDEN I
Arabidopsis Description
NPF4.3Protein NRT1/ PTR FAMILY 4.3 [Source:UniProtKB/Swiss-Prot;Acc:Q93VV5]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.