Factsheet for VIT_18s0089g01010.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
golgi 2
plasma membrane 4
vacuole 2
extracellular 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	golgi
Plant-mPloc:	plasma membrane, vacuole
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g042820.1.1	Tomato	peroxisome, plasma membrane, vacuole	49.39	75.38
PGSC0003DMT400082762	Potato	plasma membrane	37.57	75.22
GSMUA_Achr5P16920_001	Banana	plasma membrane	45.3	73.61
GSMUA_AchrUn_...	Banana	plasma membrane	15.03	73.51
GSMUA_Achr8P08410_001	Banana	plasma membrane	47.73	73.34
GSMUA_Achr10P...	Banana	plasma membrane	45.64	73.23
GSMUA_Achr6P07370_001	Banana	plasma membrane	44.86	72.5
CDY50182	Canola	plasma membrane	47.07	72.45
CDX93764	Canola	plasma membrane	47.85	72.17
Bra028002.1-P	Field mustard	peroxisome	47.73	72.0
GSMUA_Achr9P08330_001	Banana	plasma membrane	46.41	71.92
AT1G33440.1	Thale cress	plasma membrane	47.73	71.88
VIT_12s0035g01820.t01	Wine grape	golgi, peroxisome, plasma membrane	48.29	71.64
GSMUA_Achr6P29080_001	Banana	plasma membrane	45.75	70.17
OQU83190	Sorghum	plasma membrane	43.65	69.79
HORVU4Hr1G015640.2	Barley	golgi, peroxisome, plasma membrane	45.19	67.83
TraesCS4B01G090800.1	Wheat	golgi, peroxisome, plasma membrane	45.19	67.72
TraesCS4D01G087900.1	Wheat	golgi, peroxisome, plasma membrane	45.08	67.44
TraesCS4A01G225400.1	Wheat	golgi, peroxisome, plasma membrane, plastid	45.08	67.33
Os11t0235200-01	Rice	plasma membrane	46.3	66.93
Zm00001d007255_P001	Maize	plasma membrane	45.08	65.49
GSMUA_Achr8P29280_001	Banana	plasma membrane	45.3	64.36
VIT_01s0026g01570.t01	Wine grape	plasma membrane	25.64	39.66
VIT_14s0060g00220.t01	Wine grape	plasma membrane	26.74	39.16
VIT_18s0001g11280.t01	Wine grape	plastid	27.4	38.99
VIT_11s0016g05170.t01	Wine grape	plasma membrane	24.42	38.37
VIT_17s0000g05640.t01	Wine grape	cytosol, plasma membrane, plastid	25.75	38.2
VIT_02s0154g00260.t01	Wine grape	plastid	24.97	35.09
VIT_11s0016g05180.t01	Wine grape	plasma membrane	22.65	35.04
VIT_02s0087g00580.t01	Wine grape	plasma membrane	11.05	33.78
VIT_12s0059g01240.t01	Wine grape	plastid	23.76	33.13
VIT_01s0150g00250.t01	Wine grape	cytosol, peroxisome, plasma membrane	22.43	31.72

Protein Annotations

Gene3D:1.20.1250.20	EntrezGene:100243054	wikigene:100243054	EntrezGene:100265345	wikigene:100265345	MapMan:24.2.2.9
Gene3D:3.80.10.10	EMBL:AM485462	ProteinID:CAN77702	ProteinID:CAN77702.1	ProteinID:CCB44114	ProteinID:CCB44114.1
InterPro:F-box-like_dom_sf	UniProt:F6GVX9	EMBL:FN594956	GO:GO:0003674	GO:GO:0005215	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021
GO:GO:0022857	GO:GO:0055085	InterPro:IPR032675	EntrezGene:LOC100243054	wikigene:LOC100243054	EntrezGene:LOC100265345
wikigene:LOC100265345	InterPro:LRR_dom_sf	InterPro:MFS_trans_sf	PFAM:PF00854	InterPro:POT_fam	PANTHER:PTHR11654
PANTHER:PTHR11654:SF198	SUPFAM:SSF103473	SUPFAM:SSF52047	SUPFAM:SSF81383	TMHMM:TMhelix	UniParc:UPI00021091DD
ArrayExpress:VIT_18s0089g01010	EnsemblPlantsGene:VIT_18s0089g01010	EnsemblPlants:VIT_18s0089g01010.t01	unigene:Vvi.8355	RefSeq:XP_002265350	RefSeq:XP_002265350.2
RefSeq:XP_002265399	RefSeq:XP_002265399.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr18:-:28874985..28886309

Molecular Weight (calculated)

101603.0 Da

IEP (calculated)

7.862

GRAVY (calculated)

0.239

Length

905 amino acids

Sequence
(BLAST)

001: MDGMEKTRRK LKGESMTMSV KTSVDWRGRP CKANKHGGMT AAIFVLGLQA FEMMAIAAVG NNLITYVFND MHFPLSKSAN IVTNFIGTVF LLSLLGGFLS
101: DSYLGSFWTM LIFGFVELSG FILLSVQAHL PQLRPAHCTM VLDEDNCSEA KGYKALIFFL ALYLVALGSG CLKPNIISHG ADQFRKEDSK QSKKLSSYFN
201: AAYFAFCMGE LVALTVLVWV QTHSGMDVGF GVSAAAMAMG LISLISGTLV YMNKPPRGSI FTPIAQVFVA AITKRKQICP SNSGMLHGSQ LPEQALASSN
301: VRNLLHTEKF RFLDKACIKV QDGTQTSESP WRLCTVTQVE QVKIIISVVP IFACTIIFNT ILAQLQTFSV QQGSAMNTRL IKGFQIPPAS LQSIPYLMLI
401: FLVPLYETVF VPIARKITGR DSGISPLQRI GIGLFVATLS MVSAALVEKK RRTSALDSNR ILSIFWIAPQ FLIFGLSEMF TAVGLIEFFY KQSVEGMQSF
501: LTAMTYCSYS FGFFLSSLLV SLVNRITSSH SSSRGWLGDN DLNKDRLDLF YWLLAALSLI NFFNYLFWSR WYSYNPSLSP TSQHVRLAKT SLTELIVFAL
601: SVVSLQPLLL QFLIEQLQSQ MEGQKWEELN MDILVNVLRR VGMESLLLDV PFVCKSWYKA SRKPQCWEHL IFPKFITPDD IGEEDSPDRG FAERLAMTYQ
701: ENLSVTASVK LILNRSCGHA TIIKLPNYCT EEALECPRLK VLDVGDFNMS IEAIIPQFIS KWKSLEMMRL GKFHMKEVLP EIGLHCNNFI WLSAPETYIG
801: KDEASAIVTS LPQLKYLDLH GASFEKETLL MILQGCKQLV HLDIRDCWGF HGVDAEILKL ASHIPTFMWE GSIRIPEIES SYVHDLKLDH ELFCDQINHR
901: TAFMI

Best Arabidopsis Sequence Match ( AT1G33440.1 )
(BLAST)

001: MDVHDLSEEA KRGVIHTSEE SLDDLCVDFR GRPCRPSKHG GTRAALFVLG FQAFEMMAIA AVGNNLITYV FNEMHFPLSK SANLVTNFIG TVFLLSLLGG
101: FLSDSYLGSF RTMLVFGVIE ISGFILLSVQ AHLPELRPPE CNMKSTTIHC VEANGYKAAT LYTALCLVAL GSGCLKPNII SHGANQFQRK DLRKLSSFFN
201: AAYFAFSMGQ LIALTLLVWV QTHSGMDVGF GVSAAVMAAG MISLVAGTSF YRNKPPSGSI FTPIAQVFVA AITKRKQICP SNPNMVHQPS TDLVRVKPLL
301: HSNKFRFLDK ACIKTQGKAM ESPWRLCTIE QVHQVKILLS VIPIFACTII FNTILAQLQT FSVQQGSSMN THITKTFQIP PASLQAIPYI ILIFFVPLYE
401: TFFVPLARKL TGNDSGISPL QRIGTGLFLA TFSMVAAALV EKKRRESFLE QNVMLSIFWI APQFLIFGLS EMFTAVGLVE FFYKQSSQSM QSFLTAMTYC
501: SYSFGFYLSS VLVSTVNRVT SSNGSGTKEG WLGDNDLNKD RLDHFYWLLA SLSFINFFNY LFWSRWYSCD PSATHHSAEV NSLEALENGE IKDSTTEKPR
601: I

Arabidopsis Description

NPF4.4Protein NRT1/ PTR FAMILY 4.4 [Source:UniProtKB/Swiss-Prot;Acc:Q56XQ6]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.