Factsheet for VIT_11s0016g05170.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 1
vacuole 3
peroxisome 1
extracellular 1
endoplasmic reticulum 1
plasma membrane 3
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, peroxisome, secretory
BaCelLo:	cytosol
EpiLoc:	vacuole
MultiLoc:	peroxisome
Plant-mPloc:	vacuole
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH03705	Soybean	plasma membrane	78.65	77.44
KRH20280	Soybean	plasma membrane	77.78	77.11
PGSC0003DMT400075163	Potato	plasma membrane	77.43	76.9
Solyc01g096880.2.1	Tomato	plasma membrane	76.56	76.83
Solyc07g032490.2.1	Tomato	plasma membrane	75.87	76.8
PGSC0003DMT400070732	Potato	plasma membrane	75.69	75.83
AT2G26690.1	Thale cress	plasma membrane	74.65	74.52
CDY45207	Canola	golgi, plasma membrane	73.78	72.4
Bra012052.1-P	Field mustard	plasma membrane	65.45	72.36
CDX71495	Canola	plasma membrane	74.65	71.67
GSMUA_Achr6P05170_001	Banana	plasma membrane	71.88	71.5
CDY30787	Canola	mitochondrion	73.78	70.72
HORVU1Hr1G004720.4	Barley	plasma membrane	64.76	64.64
TraesCS1A01G031300.1	Wheat	peroxisome	65.1	64.43
TraesCS1B01G038700.1	Wheat	peroxisome	65.1	64.43
TraesCS1D01G032700.1	Wheat	peroxisome	64.58	63.92
GSMUA_Achr7P08300_001	Banana	plasma membrane	74.65	63.89
KXG32694	Sorghum	cytosol	64.41	63.2
Zm00001d044529_P001	Maize	cytosol, peroxisome, plasma membrane	64.24	62.61
GSMUA_Achr4P30700_001	Banana	plasma membrane	74.13	62.15
Zm00001d009399_P001	Maize	cytosol, peroxisome, plasma membrane	62.67	61.08
VIT_11s0016g05180.t01	Wine grape	plasma membrane	57.81	56.92
VIT_02s0154g00260.t01	Wine grape	plastid	57.29	51.24
VIT_12s0059g01240.t01	Wine grape	plastid	48.44	42.99
VIT_02s0087g00580.t01	Wine grape	plasma membrane	21.18	41.22
VIT_12s0035g01820.t01	Wine grape	golgi, peroxisome, plasma membrane	37.85	35.74
VIT_01s0026g01570.t01	Wine grape	plasma membrane	34.9	34.36
VIT_18s0001g11280.t01	Wine grape	plastid	37.85	34.28
VIT_17s0000g05640.t01	Wine grape	cytosol, plasma membrane, plastid	35.94	33.93
VIT_01s0150g00250.t01	Wine grape	cytosol, peroxisome, plasma membrane	36.11	32.5
VIT_14s0060g00220.t01	Wine grape	plasma membrane	34.2	31.88
VIT_18s0089g01010.t01	Wine grape	plasma membrane	38.37	24.42

Protein Annotations

Gene3D:1.20.1250.20	EntrezGene:100268060	wikigene:100268060	MapMan:24.2.2.9	ProteinID:CBI28187	ProteinID:CBI28187.3
UniProt:D7TC02	EMBL:FN595756	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810
GO:GO:0006857	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0022857	GO:GO:0055085
EntrezGene:LOC100268060	wikigene:LOC100268060	InterPro:MFS_trans_sf	PFAM:PF00854	InterPro:POT_fam	ScanProsite:PS01022
PANTHER:PTHR11654	PANTHER:PTHR11654:SF85	InterPro:PTR2_symporter_CS	SUPFAM:SSF103473	TIGR:TC65083	TMHMM:TMhelix
UniParc:UPI00015C8C65	ArrayExpress:VIT_11s0016g05170	EnsemblPlantsGene:VIT_11s0016g05170	EnsemblPlants:VIT_11s0016g05170.t01	RefSeq:XP_002281975	RefSeq:XP_002281975.1
RefSeq:XP_010656420.1	RefSeq:XP_010656421.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr11:+:4444763..4448289

Molecular Weight (calculated)

63437.9 Da

IEP (calculated)

8.947

GRAVY (calculated)

0.355

Length

576 amino acids

Sequence
(BLAST)

001: MSWTVADAVD YKGFPADRSK TGGWVPAALI LGIEICERLS TMGIAVNLVT YLVSTMHLPS ATSANTVTDF MGTSFLLCLL GGFLADSFLG RFRTIAIFAT
101: VQAMGTGMLA IITRLPQLQP PPCKNTPTQT CKQANGFQMG ILYLALYLIA LGTGGLKSSV SGFGTDQFDD KDEKEQSQMI YFFSRFFFFI STGTLMAVTV
201: LVYIQDEVSR SLGYGICCVS MLIAILVYFS GTKRYRYKKS VGSPIVHISQ VIVAAMRKRK MDLPFNASLL YEDSAEGSRI QHTDQFRCLD KAAILAGEFD
301: KTASSDPNPW KLCSVTRVEE VKMMARLLPI WATTIIFWTT YAQMITFSVE QASTMERSIG NFQIPAGSLT VFFVAAILIT LAVYDRFIMP MWKKWRGKPG
401: FSSLQRIALG LILSIVGMTA AALAERRRLS VAKAVGDNTA TLPISVFLLI PQFFLVGSGE AFIYTGQLDF FITQSPKGMK TMSTGLFLST LSLGFFVSSF
501: LVSVVKRVTG SRDGQGWLAD NINYGRLDCF YGLLAILSFI NFAVFLVCAV WYKPQKPNDG MQMETMANGS CPEEKC

Best Arabidopsis Sequence Match ( AT2G26690.1 )
(BLAST)

001: MESKGSWTVA DAVDYKGRPA DKSKTGGWIT AALILGIEVV ERLSTMGIAV NLVTYLMETM HLPSSTSANI VTDFMGTSFL LCLLGGFLAD SFLGRFKTIG
101: IFSTIQALGT GALAVATKLP ELRPPTCHHG EACIPATAFQ MTILYVSLYL IALGTGGLKS SISGFGSDQF DDKDPKEKAH MAFFFNRFFF FISMGTLLAV
201: TVLVYMQDEV GRSWAYGICT VSMAIAIVIF LCGTKRYRYK KSQGSPVVQI FQVIAAAFRK RKMELPQSIV YLYEDNPEGI RIEHTDQFHL LDKAAIVAEG
301: DFEQTLDGVA IPNPWKLSSV TKVEEVKMMV RLLPIWATTI IFWTTYAQMI TFSVEQASTM RRNIGSFKIP AGSLTVFFVA AILITLAVYD RAIMPFWKKW
401: KGKPGFSSLQ RIAIGLVLST AGMAAAALVE QKRLSVAKSS SQKTLPISVF LLVPQFFLVG AGEAFIYTGQ LDFFITQSPK GMKTMSTGLF LTTLSLGFFV
501: SSFLVSIVKR VTSTSTDVGW LADNINHGRL DYFYWLLVIL SGINFVVYII CALWFKPTKG KDSVEKENGK GFSVEDC

Arabidopsis Description

NPF6.2Protein NRT1/ PTR FAMILY 6.2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZY4]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.