Factsheet for VIT_11s0016g05180.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 1
plastid 1
peroxisome 1
vacuole 2
extracellular 1
endoplasmic reticulum 1
plasma membrane 3
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, peroxisome, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	plastid
MultiLoc:	peroxisome
Plant-mPloc:	vacuole
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400053569	Potato	endoplasmic reticulum, plasma membrane	27.35	60.15
VIT_11s0016g05170.t01	Wine grape	plasma membrane	56.92	57.81
HORVU1Hr1G004720.4	Barley	plasma membrane	52.48	53.21
TraesCS1A01G031300.1	Wheat	peroxisome	52.82	53.09
TraesCS1B01G038700.1	Wheat	peroxisome	52.48	52.75
TraesCS1D01G032700.1	Wheat	peroxisome	52.48	52.75
Zm00001d044529_P001	Maize	cytosol, peroxisome, plasma membrane	52.65	52.12
KXG32694	Sorghum	cytosol	51.79	51.62
Zm00001d009399_P001	Maize	cytosol, peroxisome, plasma membrane	51.45	50.93
VIT_02s0154g00260.t01	Wine grape	plastid	49.4	44.88
VIT_12s0059g01240.t01	Wine grape	plastid	42.73	38.52
VIT_12s0035g01820.t01	Wine grape	golgi, peroxisome, plasma membrane	36.07	34.59
VIT_02s0087g00580.t01	Wine grape	plasma membrane	17.27	34.12
VIT_01s0026g01570.t01	Wine grape	plasma membrane	33.5	33.5
VIT_01s0150g00250.t01	Wine grape	cytosol, peroxisome, plasma membrane	35.9	32.81
VIT_18s0001g11280.t01	Wine grape	plastid	35.56	32.7
VIT_14s0060g00220.t01	Wine grape	plasma membrane	33.85	32.04
VIT_17s0000g05640.t01	Wine grape	cytosol, plasma membrane, plastid	32.99	31.64
VIT_18s0089g01010.t01	Wine grape	plasma membrane	35.04	22.65

Protein Annotations

Gene3D:1.20.1250.20	EntrezGene:100247542	wikigene:100247542	MapMan:24.2.2.9	ProteinID:CBI28188	ProteinID:CBI28188.3
UniProt:D7TC03	EMBL:FN595756	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0022857	GO:GO:0055085	InterPro:IPR020846
EntrezGene:LOC100247542	wikigene:LOC100247542	InterPro:MFS_dom	InterPro:MFS_trans_sf	PFAM:PF00854	InterPro:POT_fam
PANTHER:PTHR11654	PANTHER:PTHR11654:SF85	SUPFAM:SSF103473	TMHMM:TMhelix	UniParc:UPI00015C8C66	ArrayExpress:VIT_11s0016g05180
EnsemblPlantsGene:VIT_11s0016g05180	EnsemblPlants:VIT_11s0016g05180.t01	RefSeq:XP_002282012	RefSeq:XP_002282012.2	SEG:seg	:

Description

No Description!

Coordinates

chr11:+:4466615..4469928

Molecular Weight (calculated)

64252.5 Da

IEP (calculated)

9.298

GRAVY (calculated)

0.270

Length

585 amino acids

Sequence
(BLAST)

001: METEERKALV LDAYDYKGAP ADRAQTGGWV SAATILGIEV SERFTTMGIA VNLVTYLDNT MHQPSATSST IVANFSGVSF LLCLLGGCVA DSFLGRYWTI
101: AIFAVIEALG ACVLAISATL SHLRPPPCNP SVAIKCVKAN NLQMGVFFLG LFAMALGIGG VKSSVSALGT DQFDQTDEKE KTQMEYFFNR FYFLINIGTI
201: LAVTLLVYIQ DEVSRGVGYG ICSAAMLMAV IVFLSRTRRY RYKKLTGSPL IQVIQVIVAA IQKRKLEFPS DLSLLYEDSS AKSKICRTDQ FRWLDKATIR
301: SDGDLGKNGS ETPNPWRLST VTRVEELKMM IRLLPIWATT IIFWCVHAQV ITFSVQQAAS MDRSIGKFHV PAASFSVFFI GATMITLALY DRMVMKKSRG
401: SRGLTNLQKI GLGLAISVIA MAVAAAMEQK RLKVIRANRN TPTSTLPLTA FILIPQFAIV GIAEAFMYSG QLAFFISEAP KGMKAISNSL FLTTISFGYF
501: VTTILVDLIK KITPGKDGGH GWLAPKINDS RLDYFYALIS VLSFINLGLY LVCARWYKPN SSENAKDSDV NASHDEEKPQ DVSNS

Best Arabidopsis Sequence Match ( AT2G26690.1 )
(BLAST)

001: MESKGSWTVA DAVDYKGRPA DKSKTGGWIT AALILGIEVV ERLSTMGIAV NLVTYLMETM HLPSSTSANI VTDFMGTSFL LCLLGGFLAD SFLGRFKTIG
101: IFSTIQALGT GALAVATKLP ELRPPTCHHG EACIPATAFQ MTILYVSLYL IALGTGGLKS SISGFGSDQF DDKDPKEKAH MAFFFNRFFF FISMGTLLAV
201: TVLVYMQDEV GRSWAYGICT VSMAIAIVIF LCGTKRYRYK KSQGSPVVQI FQVIAAAFRK RKMELPQSIV YLYEDNPEGI RIEHTDQFHL LDKAAIVAEG
301: DFEQTLDGVA IPNPWKLSSV TKVEEVKMMV RLLPIWATTI IFWTTYAQMI TFSVEQASTM RRNIGSFKIP AGSLTVFFVA AILITLAVYD RAIMPFWKKW
401: KGKPGFSSLQ RIAIGLVLST AGMAAAALVE QKRLSVAKSS SQKTLPISVF LLVPQFFLVG AGEAFIYTGQ LDFFITQSPK GMKTMSTGLF LTTLSLGFFV
501: SSFLVSIVKR VTSTSTDVGW LADNINHGRL DYFYWLLVIL SGINFVVYII CALWFKPTKG KDSVEKENGK GFSVEDC

Arabidopsis Description

NPF6.2Protein NRT1/ PTR FAMILY 6.2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZY4]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.