Factsheet for VIT_12s0059g01240.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
plasma membrane 3
mitochondrion 1
cytosol 1
vacuole 2
extracellular 1
endoplasmic reticulum 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	plasma membrane
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	vacuole
Predotar:	secretory
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_02s0087g00580.t01	Wine grape	plasma membrane	42.22	92.57
KRH14759	Soybean	plasma membrane	67.03	74.11
KRH73378	Soybean	cytosol, peroxisome, plasma membrane	66.87	73.81
Solyc12g006050.1.1	Tomato	cytosol, peroxisome, plasma membrane	66.56	72.97
PGSC0003DMT400010957	Potato	cytosol, peroxisome, plasma membrane	66.56	72.97
PGSC0003DMT400001784	Potato	cytosol, peroxisome, plasma membrane	66.41	72.68
Solyc07g049290.2.1	Tomato	nucleus	65.95	72.42
Bra023868.1-P	Field mustard	plasma membrane	63.33	71.11
Bra031295.1-P	Field mustard	plasma membrane	63.64	70.72
AT3G21670.1	Thale cress	plasma membrane	64.25	70.68
CDY44319	Canola	plasma membrane	51.0	70.28
CDY38629	Canola	plasma membrane	51.16	69.31
GSMUA_Achr3P05990_001	Banana	cytosol, plasma membrane, plastid	59.63	67.42
Zm00001d016982_P001	Maize	plasma membrane	59.94	65.27
EES05323	Sorghum	plasma membrane	59.63	64.82
Os02t0580900-01	Rice	plasma membrane	59.78	63.71
TraesCS5D01G419200.2	Wheat	plasma membrane	58.4	63.7
TraesCS5A01G409600.1	Wheat	plasma membrane	58.09	63.47
TraesCS5B01G414000.3	Wheat	plasma membrane	58.09	63.47
HORVU2Hr1G065480.1	Barley	golgi, plasma membrane	21.57	62.22
TraesCS2D01G327000.1	Wheat	plasma membrane	54.08	62.12
TraesCS2B01G346100.1	Wheat	plasma membrane	53.62	61.59
HORVU5Hr1G099170.6	Barley	plasma membrane	57.63	61.31
TraesCS2A01G335800.1	Wheat	mitochondrion	54.24	58.18
HORVU2Hr1G081050.1	Barley	endoplasmic reticulum, extracellular	5.86	55.07
VIT_11s0016g05170.t01	Wine grape	plasma membrane	42.99	48.44
VIT_02s0154g00260.t01	Wine grape	plastid	44.99	45.34
VIT_11s0016g05180.t01	Wine grape	plasma membrane	38.52	42.73
Os04t0464400-00	Rice	peroxisome, plasma membrane	35.9	37.4
VIT_01s0026g01570.t01	Wine grape	plasma membrane	32.51	36.07
VIT_17s0000g05640.t01	Wine grape	cytosol, plasma membrane, plastid	33.13	35.25
VIT_12s0035g01820.t01	Wine grape	golgi, peroxisome, plasma membrane	32.82	34.92
VIT_18s0001g11280.t01	Wine grape	plastid	32.82	33.49
VIT_01s0150g00250.t01	Wine grape	cytosol, peroxisome, plasma membrane	32.36	32.81
VIT_14s0060g00220.t01	Wine grape	plasma membrane	29.74	31.23
VIT_18s0089g01010.t01	Wine grape	plasma membrane	33.13	23.76

Protein Annotations

Gene3D:1.20.1250.20	EntrezGene:100255020	wikigene:100255020	MapMan:24.2.2.9	ProteinID:CCB51989	ProteinID:CCB51989.1
UniProt:F6HIE3	EMBL:FN595765	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0022857	GO:GO:0055085	InterPro:IPR020846
EntrezGene:LOC100255020	wikigene:LOC100255020	InterPro:MFS_dom	InterPro:MFS_trans_sf	PFAM:PF00854	InterPro:POT_fam
PANTHER:PTHR11654	PANTHER:PTHR11654:SF154	SUPFAM:SSF103473	TIGR:TC52851	TMHMM:TMhelix	UniParc:UPI0002108DC1
ArrayExpress:VIT_12s0059g01240	EnsemblPlantsGene:VIT_12s0059g01240	EnsemblPlants:VIT_12s0059g01240.t01	unigene:Vvi.6986	RefSeq:XP_002274227	RefSeq:XP_002274227.1
RefSeq:XP_002274227.2	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr12:-:6163261..6166465

Molecular Weight (calculated)

72121.1 Da

IEP (calculated)

9.502

GRAVY (calculated)

0.235

Length

649 amino acids

Sequence
(BLAST)

001: MPTNIRLLSY FLPQSFTSVY INYNPSLVNS TTNHPISALL SLSLSLSLSP SPSAKMVLVD AHAGKDGTDD GALDFRGNPV DKTRTGGWLG AGLILGTEFA
101: ERVCVMGISM NLVTYLVQNL HISAAKSATI VTNFMGTLNL CGLLAGFLAD AKLGRYLTVA IFGSITALGV ILLTVATTIP SMRPPPCSDY MRQHHQCIEA
201: NGSQLAMLYA ALYTIALGGG GIKSNVSGFG SDQFDNSDPK EEKAMIFFFN RFYFCVSIGS LFAVTVLVYI QDNVGRGWGY GISAVTMVIA VTILLGGTPF
301: YRFKMPRGSP LTVIWRVIFL AWRKRNLPYP SHPSLLNEYH NAKVSHTQRF RCLDKAAILE DYYSASGNKD NPWIVSTVNQ VEEVKMVIKL LPIWSTCILF
401: WTVYSQMTTF TIEQATFMNR KLGSFVVPSG SFSVFLFISI LLFTSLNERI FVPCARKLTH NVQGVTSLQR VGIGLIFSMV AMVTAAIVEK QRREAAVQHK
501: TNISAFWLVP QFFLVGAGEA FAYVGQLEFF IREAPDRMKS MSTGLFLSTL AMGFFVSSLL VSLVDKVTNM RWLRSNLNRG KLDNFYWMLA VLGVLNFLAF
601: LVFAMRHQYK TLQYKSPDVY GENELKKGWN EGITSEMEKK ERVEGKEEP

Best Arabidopsis Sequence Match ( AT3G21670.1 )
(BLAST)

001: MVHVSSSHGA KDGSEEAYDY RGNPPDKSKT GGWLGAGLIL GSELSERICV MGISMNLVTY LVGDLHISSA KSATIVTNFM GTLNLLGLLG GFLADAKLGR
101: YKMVAISASV TALGVLLLTV ATTISSMRPP ICDDFRRLHH QCIEANGHQL ALLYVALYTI ALGGGGIKSN VSGFGSDQFD TSDPKEEKQM IFFFNRFYFS
201: ISVGSLFAVI ALVYVQDNVG RGWGYGISAA TMVVAAIVLL CGTKRYRFKK PKGSPFTTIW RVGFLAWKKR KESYPAHPSL LNGYDNTTVP HTEMLKCLDK
301: AAISKNESSP SSKDFEEKDP WIVSTVTQVE EVKLVMKLVP IWATNILFWT IYSQMTTFTV EQATFMDRKL GSFTVPAGSY SAFLILTILL FTSLNERVFV
401: PLTRRLTKKP QGITSLQRIG VGLVFSMAAM AVAAVIENAR REAAVNNDKK ISAFWLVPQY FLVGAGEAFA YVGQLEFFIR EAPERMKSMS TGLFLSTISM
501: GFFVSSLLVS LVDRVTDKSW LRSNLNKARL NYFYWLLVVL GALNFLIFIV FAMKHQYKAD VITVVVTDDD SVEKEVTKKE SSEFELKDIP

Arabidopsis Description

NPF6.4Protein NRT1/ PTR FAMILY 6.4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVE0]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.