Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 2
- plastid 1
- vacuole 2
- extracellular 1
- endoplasmic reticulum 1
- plasma membrane 2
- golgi 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400001784 | Potato | cytosol, peroxisome, plasma membrane | 96.45 | 96.12 |
| Solyc12g006050.1.1 | Tomato | cytosol, peroxisome, plasma membrane | 81.22 | 81.08 |
| KRH73378 | Soybean | cytosol, peroxisome, plasma membrane | 71.24 | 71.6 |
| KRH14759 | Soybean | plasma membrane | 71.07 | 71.55 |
| GSMUA_Achr3P05990_001 | Banana | cytosol, plasma membrane, plastid | 64.81 | 66.72 |
| Bra031295.1-P | Field mustard | plasma membrane | 65.48 | 66.27 |
| Bra023868.1-P | Field mustard | plasma membrane | 64.81 | 66.26 |
| VIT_12s0059g01240.t01 | Wine grape | plastid | 72.42 | 65.95 |
| AT3G21670.1 | Thale cress | plasma membrane | 65.48 | 65.59 |
| CDY44319 | Canola | plasma membrane | 51.95 | 65.18 |
| CDY38629 | Canola | plasma membrane | 51.78 | 63.88 |
| VIT_02s0087g00580.t01 | Wine grape | plasma membrane | 31.81 | 63.51 |
| EES05323 | Sorghum | plasma membrane | 63.96 | 63.32 |
| Os02t0580900-01 | Rice | plasma membrane | 64.81 | 62.89 |
| Zm00001d016982_P001 | Maize | plasma membrane | 63.28 | 62.75 |
| TraesCS5B01G414000.3 | Wheat | plasma membrane | 62.61 | 62.29 |
| TraesCS5A01G409600.1 | Wheat | plasma membrane | 62.44 | 62.12 |
| TraesCS2D01G327000.1 | Wheat | plasma membrane | 59.22 | 61.95 |
| TraesCS5D01G419200.2 | Wheat | plasma membrane | 62.27 | 61.85 |
| TraesCS2B01G346100.1 | Wheat | plasma membrane | 59.05 | 61.77 |
| HORVU2Hr1G065480.1 | Barley | golgi, plasma membrane | 23.35 | 61.33 |
| HORVU5Hr1G099170.6 | Barley | plasma membrane | 61.76 | 59.84 |
| TraesCS2A01G335800.1 | Wheat | mitochondrion | 58.71 | 57.36 |
| Solyc07g032490.2.1 | Tomato | plasma membrane | 48.9 | 50.79 |
| Solyc01g096880.2.1 | Tomato | plasma membrane | 48.73 | 50.17 |
| Solyc08g078950.2.1 | Tomato | cytosol, peroxisome, plasma membrane | 49.92 | 50.0 |
| Solyc08g007430.1.1 | Tomato | cytosol, peroxisome, plasma membrane | 48.05 | 48.14 |
| Solyc06g060620.2.1 | Tomato | plasma membrane | 46.36 | 46.28 |
| Solyc08g061020.1.1 | Tomato | plasma membrane | 22.84 | 45.0 |
| HORVU2Hr1G081050.1 | Barley | endoplasmic reticulum, extracellular | 5.25 | 44.93 |
| Solyc08g061010.2.1 | Tomato | plasma membrane | 18.95 | 42.11 |
| Os04t0464400-00 | Rice | peroxisome, plasma membrane | 40.44 | 38.36 |
| Solyc05g007000.2.1 | Tomato | plasma membrane | 34.86 | 36.27 |
| Solyc01g103030.2.1 | Tomato | cytosol, peroxisome, plasma membrane | 36.89 | 35.97 |
| Solyc11g042820.1.1 | Tomato | peroxisome, plasma membrane, vacuole | 35.36 | 35.24 |
| Solyc05g006990.2.1 | Tomato | endoplasmic reticulum, peroxisome, plasma membrane | 34.52 | 34.81 |
| Solyc04g079510.1.1 | Tomato | plasma membrane | 33.33 | 34.5 |
| Solyc04g005790.2.1 | Tomato | plasma membrane | 33.84 | 34.42 |
| Solyc04g079520.2.1 | Tomato | plasma membrane | 33.33 | 33.85 |
| Solyc10g039290.1.1 | Tomato | plasma membrane | 32.32 | 33.39 |
| Solyc04g079530.2.1 | Tomato | plasma membrane | 32.49 | 33.16 |
| Solyc01g102360.1.1 | Tomato | plasma membrane | 33.84 | 32.84 |
| Solyc03g005950.1.1 | Tomato | plasma membrane | 34.52 | 32.54 |
| Solyc03g113250.2.1 | Tomato | plasma membrane | 30.29 | 29.34 |
Protein Annotations
| MapMan:24.2.2.9 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0022857 | GO:GO:0055085 | InterPro:IPR020846 | UniProt:K4CF32 |
| InterPro:MFS_dom | InterPro:MFS_trans_sf | PFAM:PF00854 | InterPro:POT_fam | PANTHER:PTHR11654 | PANTHER:PTHR11654:SF154 |
| SUPFAM:SSF103473 | EnsemblPlantsGene:Solyc07g049290.2 | EnsemblPlants:Solyc07g049290.2.1 | TMHMM:TMhelix | UniParc:UPI000276B058 | SEG:seg |
Description
No Description!
Coordinates
chr7:-:59543273..59546277
Molecular Weight (calculated)
65039.6 Da
IEP (calculated)
9.566
GRAVY (calculated)
0.253
Length
591 amino acids
Sequence
(BLAST)
(BLAST)
001: MVLVDNHAGK DGAEDGNMVD FRGNPVDKSR TGGWLAAGLI LGTELSERVC VMGISMNLVT YLVGDLHLPS SKSANIVTNF MGTLNLLGLL GGFLADAKLG
101: RYLTVGIFAS IAAVGVTLLT LATSIPGMKP PECNPRKSGH CIEASGQQLA LLYTALYILA LGGGGIKSNV SGFGSDQFDS SDPKENKSMI YFFNRFYFCI
201: SLGSLFAVTV LVYLQDNVGR GWGYGISAGT MVLGVAVLIG GTTLYRFKKP QGSPLTIIWR VLLLAWRKRK LSYPSDTGFL NEYHNAKVPH THMLRCLDKA
301: AILDDSAAAN ENSKNRWIVS TVTEVEEVKM VLKLIPIWST CILFWTVYSQ MNTFTIEQAT FMNRNVGNFA VPAGSLSVFL FISILLFTSI NERVTVRIAR
401: KITHNSQGIT SLQRVGIGLL LSIVGMVASA LVEKRRREHA IHHNFKISAF WLVPQFFIVG AGEAFAYVGQ LEFFIREAPE GMKSMSTGLF LSTLSMGYFV
501: SSLLVFVVQK ATKGRWLKSN LNKGKLDLFY WLLAVLGVIN FLIFIAFSMK HQYKVQKLSS IEDSAEELGS WKDLTLDNKE KKLEADEKVE A
101: RYLTVGIFAS IAAVGVTLLT LATSIPGMKP PECNPRKSGH CIEASGQQLA LLYTALYILA LGGGGIKSNV SGFGSDQFDS SDPKENKSMI YFFNRFYFCI
201: SLGSLFAVTV LVYLQDNVGR GWGYGISAGT MVLGVAVLIG GTTLYRFKKP QGSPLTIIWR VLLLAWRKRK LSYPSDTGFL NEYHNAKVPH THMLRCLDKA
301: AILDDSAAAN ENSKNRWIVS TVTEVEEVKM VLKLIPIWST CILFWTVYSQ MNTFTIEQAT FMNRNVGNFA VPAGSLSVFL FISILLFTSI NERVTVRIAR
401: KITHNSQGIT SLQRVGIGLL LSIVGMVASA LVEKRRREHA IHHNFKISAF WLVPQFFIVG AGEAFAYVGQ LEFFIREAPE GMKSMSTGLF LSTLSMGYFV
501: SSLLVFVVQK ATKGRWLKSN LNKGKLDLFY WLLAVLGVIN FLIFIAFSMK HQYKVQKLSS IEDSAEELGS WKDLTLDNKE KKLEADEKVE A
001: MVHVSSSHGA KDGSEEAYDY RGNPPDKSKT GGWLGAGLIL GSELSERICV MGISMNLVTY LVGDLHISSA KSATIVTNFM GTLNLLGLLG GFLADAKLGR
101: YKMVAISASV TALGVLLLTV ATTISSMRPP ICDDFRRLHH QCIEANGHQL ALLYVALYTI ALGGGGIKSN VSGFGSDQFD TSDPKEEKQM IFFFNRFYFS
201: ISVGSLFAVI ALVYVQDNVG RGWGYGISAA TMVVAAIVLL CGTKRYRFKK PKGSPFTTIW RVGFLAWKKR KESYPAHPSL LNGYDNTTVP HTEMLKCLDK
301: AAISKNESSP SSKDFEEKDP WIVSTVTQVE EVKLVMKLVP IWATNILFWT IYSQMTTFTV EQATFMDRKL GSFTVPAGSY SAFLILTILL FTSLNERVFV
401: PLTRRLTKKP QGITSLQRIG VGLVFSMAAM AVAAVIENAR REAAVNNDKK ISAFWLVPQY FLVGAGEAFA YVGQLEFFIR EAPERMKSMS TGLFLSTISM
501: GFFVSSLLVS LVDRVTDKSW LRSNLNKARL NYFYWLLVVL GALNFLIFIV FAMKHQYKAD VITVVVTDDD SVEKEVTKKE SSEFELKDIP
101: YKMVAISASV TALGVLLLTV ATTISSMRPP ICDDFRRLHH QCIEANGHQL ALLYVALYTI ALGGGGIKSN VSGFGSDQFD TSDPKEEKQM IFFFNRFYFS
201: ISVGSLFAVI ALVYVQDNVG RGWGYGISAA TMVVAAIVLL CGTKRYRFKK PKGSPFTTIW RVGFLAWKKR KESYPAHPSL LNGYDNTTVP HTEMLKCLDK
301: AAISKNESSP SSKDFEEKDP WIVSTVTQVE EVKLVMKLVP IWATNILFWT IYSQMTTFTV EQATFMDRKL GSFTVPAGSY SAFLILTILL FTSLNERVFV
401: PLTRRLTKKP QGITSLQRIG VGLVFSMAAM AVAAVIENAR REAAVNNDKK ISAFWLVPQY FLVGAGEAFA YVGQLEFFIR EAPERMKSMS TGLFLSTISM
501: GFFVSSLLVS LVDRVTDKSW LRSNLNKARL NYFYWLLVVL GALNFLIFIV FAMKHQYKAD VITVVVTDDD SVEKEVTKKE SSEFELKDIP
Arabidopsis Description
NPF6.4Protein NRT1/ PTR FAMILY 6.4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVE0]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.