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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • endoplasmic reticulum 2
  • vacuole 2
  • extracellular 1
  • plasma membrane 3
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:nucleus, secretory
BaCelLo:nucleus
MultiLoc:endoplasmic reticulum
Plant-mPloc:vacuole
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400045415 Potato plasma membrane 93.84 92.7
Solyc05g006990.2.1 Tomato endoplasmic reticulum, peroxisome, plasma membrane 88.38 85.67
Solyc04g005790.2.1 Tomato plasma membrane 78.87 77.11
KRH69373 Soybean plasma membrane 73.42 71.9
KRH74766 Soybean plasma membrane 72.18 70.81
VIT_01s0026g01570.t01 Wine grape plasma membrane 72.89 70.77
KRG99175 Soybean plasma membrane 72.36 70.26
GSMUA_Achr7P08880_001 Banana plasma membrane 67.96 69.8
KRH45840 Soybean plasma membrane 72.36 69.19
KRH45842 Soybean plasma membrane 70.77 67.68
Os06t0581000-01 Rice plasma membrane 69.01 66.44
Zm00001d046383_P001 Maize plasma membrane 69.01 66.22
TraesCS7A01G365100.1 Wheat plasma membrane 67.25 65.08
EER89980 Sorghum plasma membrane 68.66 64.78
GSMUA_Achr2P16840_001 Banana plasma membrane, plastid 66.2 62.35
Zm00001d036942_P001 Maize plasma membrane 59.15 62.22
TraesCS7D01G357300.2 Wheat plasma membrane 67.43 61.97
Zm00001d036941_P001 Maize plasma membrane 65.32 60.92
HORVU7Hr1G086170.5 Barley cytosol, peroxisome, plastid 67.25 60.54
GSMUA_Achr6P00820_001 Banana plasma membrane 66.2 59.49
TraesCS7B01G262200.1 Wheat plasma membrane, plastid 67.61 55.65
Solyc03g113250.2.1 Tomato plasma membrane 59.68 55.57
Solyc04g079510.1.1 Tomato plasma membrane 40.85 40.63
Solyc04g079520.2.1 Tomato plasma membrane 40.32 39.35
Solyc10g039290.1.1 Tomato plasma membrane 39.44 39.16
Solyc04g079530.2.1 Tomato plasma membrane 39.08 38.34
Solyc08g078950.2.1 Tomato cytosol, peroxisome, plasma membrane 39.61 38.14
Solyc01g103030.2.1 Tomato cytosol, peroxisome, plasma membrane 40.32 37.79
Solyc01g096880.2.1 Tomato plasma membrane 38.03 37.63
Solyc01g102360.1.1 Tomato plasma membrane 40.14 37.44
Solyc11g042820.1.1 Tomato peroxisome, plasma membrane, vacuole 38.73 37.1
Solyc06g060620.2.1 Tomato plasma membrane 38.56 36.99
Solyc08g007430.1.1 Tomato cytosol, peroxisome, plasma membrane 38.2 36.78
Solyc07g032490.2.1 Tomato plasma membrane 36.62 36.56
Solyc12g006050.1.1 Tomato cytosol, peroxisome, plasma membrane 37.32 35.81
Solyc03g005950.1.1 Tomato plasma membrane 39.08 35.41
Solyc07g049290.2.1 Tomato nucleus 36.27 34.86
Solyc08g061020.1.1 Tomato plasma membrane 18.13 34.33
Solyc08g061010.2.1 Tomato plasma membrane 15.67 33.46
Protein Annotations
Gene3D:1.20.1250.20MapMan:11.1.4.1MapMan:24.2.2.9GO:GO:0003674GO:GO:0005215GO:GO:0005575
GO:GO:0006810GO:GO:0008150GO:GO:0016020GO:GO:0016021GO:GO:0022857GO:GO:0055085
UniProt:K4BWM6InterPro:MFS_trans_sfPFAM:PF00854InterPro:POT_famPANTHER:PTHR11654PANTHER:PTHR11654:SF98
SUPFAM:SSF103473EnsemblPlantsGene:Solyc05g007000.2EnsemblPlants:Solyc05g007000.2.1TMHMM:TMhelixUniParc:UPI00027658A4SEG:seg
Description
No Description!
Coordinates
chr5:+:1592752..1598451
Molecular Weight (calculated)
62619.5 Da
IEP (calculated)
9.236
GRAVY (calculated)
0.412
Length
568 amino acids
Sequence
(BLAST)
001: MEIDNQNNWD SYVDWKNRPA INNRHGGLLA ASFVLGVEVL ENLAFLANAS NLVLYMSEYM HFSPTKSANS VTNFMGTAFL LALLGGFLSD AFFTTYYIYL
101: ISALFEFLGL VILTIQARSS SLKPPKCDLN KPCEQVHGAQ AAMLFIGLYL VALGVGGIKG SLAPHGAEQF DESTPRERKH RSTFFNYFVF CLSFGALIAV
201: TFVVWMEDNK GWQWGFGIST SAIFLSIPIF LSGSSFYRNK IPRGSPLTTI SKVIIAAVLN SSSNSSKNSS TVIASMTSSP PPPVPTSKSI ETAPSRSLSF
301: LNRAVSDTPA CGALKCTVQQ VEEVKIVMKL FPIFACTIML NCCLAQLNTF SVHQAASMNT QVGSLKVPPA SLPVFPVVFI MILAPVYDHF IIPFARRVTK
401: TEMGISHLQR IGIGLFLSIV AMAIAALVEI KRKRVATDSG LIDSAQPLPI TFFWIAFQYL FLGSADLFVL AGLLEFCFSE APVSMRSLAT SLSWASLAIG
501: YYLSSVIVSI VNHVTGISTN KPWLAGRNLN HYHLDRFYWL MCILSALNFM HYLFWATKYK YTSVTSRR
Best Arabidopsis Sequence Match ( AT1G69850.1 )
(BLAST)
001: MEVEEEVSRW EGYADWRNRA AVKGRHGGML AASFVLVVEI LENLAYLANA SNLVLYLREY MHMSPSKSAN DVTNFMGTAF LLALLGGFLS DAFFSTFQIF
101: LISASIEFLG LIILTIQART PSLMPPSCDS PTCEEVSGSK AAMLFVGLYL VALGVGGIKG SLASHGAEQF DESTPKGRKQ RSTFFNYFVF CLACGALVAV
201: TFVVWLEDNK GWEWGFGVST IAIFVSILIF LSGSRFYRNK IPCGSPLTTI LKVLLAASVK CCSSGSSSNA VASMSVSPSN HCVSKGKKEV ESQGELEKPR
301: QEEALPPRAQ LTNSLKVLNG AADEKPVHRL LECTVQQVED VKIVLKMLPI FACTIMLNCC LAQLSTFSVQ QAASMNTKIG SLKIPPASLP IFPVVFIMIL
401: APIYDHLIIP FARKATKTET GVTHLQRIGV GLVLSILAMA VAALVEIKRK GVAKDSGLLD SKETLPVTFL WIALQYLFLG SADLFTLAGL LEYFFTEAPS
501: SMRSLATSLS WASLAMGYYL SSVIVSIVNS ITGSSGNTPW LRGKSINRYK LDYFYWLMCV LSAANFLHYL FWAMRYKYRS TGSRS
Arabidopsis Description
NPF4.6Protein NRT1/ PTR FAMILY 4.6 [Source:UniProtKB/Swiss-Prot;Acc:Q8H157]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.