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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome, vacuole, plasma membrane

Predictor Summary:
  • cytosol 1
  • vacuole 3
  • extracellular 1
  • endoplasmic reticulum 1
  • plasma membrane 2
  • golgi 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:peroxisome, plasma membrane, vacuole
Any Predictor:cytosol, peroxisome, secretory
BaCelLo:cytosol
MultiLoc:vacuole
Plant-mPloc:vacuole
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:peroxisome
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400082762 Potato plasma membrane 71.84 94.25
GSMUA_AchrUn_... Banana plasma membrane 21.08 67.57
OQU83190 Sorghum plasma membrane 63.91 66.96
GSMUA_Achr8P08410_001 Banana plasma membrane 66.44 66.89
CDY50182 Canola plasma membrane 65.94 66.5
GSMUA_Achr10P... Banana plasma membrane 63.24 66.49
Solyc01g103030.2.1 Tomato cytosol, peroxisome, plasma membrane 67.79 66.34
GSMUA_Achr9P08330_001 Banana plasma membrane 65.09 66.1
GSMUA_Achr5P16920_001 Banana plasma membrane 62.06 66.07
GSMUA_Achr6P07370_001 Banana plasma membrane 62.23 65.89
CDX93764 Canola plasma membrane 66.61 65.83
Bra028002.1-P Field mustard peroxisome 66.44 65.67
AT1G33440.1 Thale cress plasma membrane 66.44 65.56
HORVU4Hr1G015640.2 Barley golgi, peroxisome, plasma membrane 65.6 64.51
GSMUA_Achr6P29080_001 Banana plasma membrane 64.08 64.41
TraesCS4D01G087900.1 Wheat golgi, peroxisome, plasma membrane 65.26 63.97
TraesCS4B01G090800.1 Wheat golgi, peroxisome, plasma membrane 65.09 63.91
TraesCS4A01G225400.1 Wheat golgi, peroxisome, plasma membrane, plastid 65.26 63.86
Os11t0235200-01 Rice plasma membrane 66.1 62.62
Zm00001d007255_P001 Maize plasma membrane 65.43 62.28
GSMUA_Achr8P29280_001 Banana plasma membrane 62.06 57.77
VIT_18s0089g01010.t01 Wine grape plasma membrane 75.38 49.39
Solyc04g079510.1.1 Tomato plasma membrane 39.29 40.81
Solyc04g079520.2.1 Tomato plasma membrane 38.11 38.83
Solyc03g005950.1.1 Tomato plasma membrane 40.98 38.76
Solyc05g007000.2.1 Tomato plasma membrane 37.1 38.73
Solyc04g079530.2.1 Tomato plasma membrane 37.61 38.51
Solyc10g039290.1.1 Tomato plasma membrane 36.93 38.29
Solyc05g006990.2.1 Tomato endoplasmic reticulum, peroxisome, plasma membrane 37.77 38.23
Solyc04g005790.2.1 Tomato plasma membrane 36.93 37.69
Solyc01g102360.1.1 Tomato plasma membrane 38.45 37.44
Solyc07g032490.2.1 Tomato plasma membrane 35.41 36.91
Solyc01g096880.2.1 Tomato plasma membrane 35.08 36.24
Solyc12g006050.1.1 Tomato cytosol, peroxisome, plasma membrane 35.92 35.98
Solyc08g078950.2.1 Tomato cytosol, peroxisome, plasma membrane 35.24 35.42
Solyc07g049290.2.1 Tomato nucleus 35.24 35.36
Solyc08g007430.1.1 Tomato cytosol, peroxisome, plasma membrane 34.57 34.75
Solyc08g061010.2.1 Tomato plasma membrane 15.51 34.59
Solyc06g060620.2.1 Tomato plasma membrane 34.23 34.29
Solyc03g113250.2.1 Tomato plasma membrane 33.22 32.3
Solyc08g061020.1.1 Tomato plasma membrane 15.85 31.33
Protein Annotations
Gene3D:1.20.1250.20MapMan:24.2.2.9GO:GO:0003674GO:GO:0005215GO:GO:0005575GO:GO:0006810
GO:GO:0008150GO:GO:0016020GO:GO:0016021GO:GO:0022857GO:GO:0055085InterPro:IPR020846
UniProt:K4D849InterPro:MFS_domInterPro:MFS_trans_sfPFAM:PF00854InterPro:POT_famPANTHER:PTHR11654
PANTHER:PTHR11654:SF198SUPFAM:SSF103473EnsemblPlantsGene:Solyc11g042820.1EnsemblPlants:Solyc11g042820.1.1TMHMM:TMhelixUniParc:UPI000276A12D
SEG:seg:::::
Description
No Description!
Coordinates
chr11:+:34125652..34129098
Molecular Weight (calculated)
66282.3 Da
IEP (calculated)
9.072
GRAVY (calculated)
0.324
Length
593 amino acids
Sequence
(BLAST)
001: MDREETRKNK SKRESAVSMA SATQKIPVDW RGRPCKPNKH GGMTAAIFVL CLQAFEMMAI AAVGNNLITY VFNEMHFPLS KSANIVTNFI GTVFLLSLFG
101: GFLSDSYLGS FWTMFIFGFV ELSGFILLAV QAHVQQLRPP KCDMMLSNGK CLKVKGYKAM IFFVALYLVA LGSGCLKPNI ISHGADQFKK QDSKKLSTYF
201: NFAYFAFCAG ELLALTLVVW VQTRYGMDVG FGVSAASMVF GLIIFLSGTL VYRNTPPGGS IFTPIAQVFV AAITKRKESC PSNLKMLHGS QCIVPQDGTL
301: IHTDKFRFLD KACIKIDNGR STSESPWRLC TVSQVEQVKI LISVVPIFAC TIIFNTILAQ LQTFSVQQAT IMNTRLTHNF TIPPASLQSI PYFMLIFLVP
401: LYEIALVPVI RKFTGNDSGI TPLQRVGIGL FIATFSMVCA ALVENKRRDY AMNQNRILSI FWIVPQFIIY GLSEMFTAVG LIEFFYKQSL EGMQSFLTAM
501: TYCSYSFGFY LSSILVSLVN RITSTSDGGG WLNNNDLNKN RLDLFYWLLA SLSLVNFINY VFCSRWYSYN PSLLPVVPLH EPQAEGHDSE NPN
Best Arabidopsis Sequence Match ( AT1G33440.1 )
(BLAST)
001: MDVHDLSEEA KRGVIHTSEE SLDDLCVDFR GRPCRPSKHG GTRAALFVLG FQAFEMMAIA AVGNNLITYV FNEMHFPLSK SANLVTNFIG TVFLLSLLGG
101: FLSDSYLGSF RTMLVFGVIE ISGFILLSVQ AHLPELRPPE CNMKSTTIHC VEANGYKAAT LYTALCLVAL GSGCLKPNII SHGANQFQRK DLRKLSSFFN
201: AAYFAFSMGQ LIALTLLVWV QTHSGMDVGF GVSAAVMAAG MISLVAGTSF YRNKPPSGSI FTPIAQVFVA AITKRKQICP SNPNMVHQPS TDLVRVKPLL
301: HSNKFRFLDK ACIKTQGKAM ESPWRLCTIE QVHQVKILLS VIPIFACTII FNTILAQLQT FSVQQGSSMN THITKTFQIP PASLQAIPYI ILIFFVPLYE
401: TFFVPLARKL TGNDSGISPL QRIGTGLFLA TFSMVAAALV EKKRRESFLE QNVMLSIFWI APQFLIFGLS EMFTAVGLVE FFYKQSSQSM QSFLTAMTYC
501: SYSFGFYLSS VLVSTVNRVT SSNGSGTKEG WLGDNDLNKD RLDHFYWLLA SLSFINFFNY LFWSRWYSCD PSATHHSAEV NSLEALENGE IKDSTTEKPR
601: I
Arabidopsis Description
NPF4.4Protein NRT1/ PTR FAMILY 4.4 [Source:UniProtKB/Swiss-Prot;Acc:Q56XQ6]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.