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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • plastid 1
  • golgi 2
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 3
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:golgi, plasma membrane, plastid
BaCelLo:plastid
MultiLoc:golgi
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX93764 Canola plasma membrane 96.09 94.17
Bra028002.1-P Field mustard peroxisome 95.58 93.67
AT1G33440.1 Thale cress plasma membrane 91.16 89.18
GSMUA_AchrUn_... Banana plasma membrane 21.94 69.73
GSMUA_Achr5P16920_001 Banana plasma membrane 63.44 66.97
GSMUA_Achr8P08410_001 Banana plasma membrane 66.84 66.72
GSMUA_Achr10P... Banana plasma membrane 63.61 66.31
PGSC0003DMT400082762 Potato plasma membrane 50.85 66.15
Solyc11g042820.1.1 Tomato peroxisome, plasma membrane, vacuole 66.5 65.94
GSMUA_Achr6P07370_001 Banana plasma membrane 61.9 65.0
GSMUA_Achr6P29080_001 Banana plasma membrane 65.14 64.92
CDY65523 Canola plastid 35.71 64.81
OQU83190 Sorghum plasma membrane 61.73 64.13
CDY45147 Canola mitochondrion 35.88 63.55
TraesCS4B01G090800.1 Wheat golgi, peroxisome, plasma membrane 64.97 63.24
GSMUA_Achr9P08330_001 Banana plasma membrane 62.76 63.18
TraesCS4D01G087900.1 Wheat golgi, peroxisome, plasma membrane 64.63 62.81
CDY45893 Canola golgi, peroxisome, plasma membrane 50.85 62.68
TraesCS4A01G225400.1 Wheat golgi, peroxisome, plasma membrane, plastid 64.46 62.54
HORVU4Hr1G015640.2 Barley golgi, peroxisome, plasma membrane 63.78 62.19
Os11t0235200-01 Rice plasma membrane 65.65 61.66
Zm00001d007255_P001 Maize plasma membrane 64.46 60.83
CDY70795 Canola plasma membrane 31.63 58.86
GSMUA_Achr8P29280_001 Banana plasma membrane 62.24 57.46
CDY67653 Canola peroxisome 34.35 55.65
VIT_18s0089g01010.t01 Wine grape plasma membrane 72.45 47.07
CDY40277 Canola plasma membrane 17.18 39.61
CDY40278 Canola plasma membrane 37.76 38.01
CDY28437 Canola plasma membrane 37.41 37.67
CDY00323 Canola plasma membrane 36.05 37.59
CDX84348 Canola plasma membrane 35.88 37.41
CDY11649 Canola cytosol, peroxisome, plasma membrane 37.41 36.97
CDY52286 Canola plasma membrane 31.97 36.43
CDY52284 Canola plasma membrane 31.63 36.12
CDY15763 Canola plasma membrane 29.93 35.99
CDY04575 Canola plasma membrane 31.63 35.91
CDY45207 Canola golgi, plasma membrane 35.54 35.6
CDX71495 Canola plasma membrane 36.05 35.33
CDY30787 Canola mitochondrion 36.05 35.27
CDY26539 Canola plasma membrane 34.01 34.84
CDY31242 Canola plasma membrane 34.01 34.78
CDY30051 Canola cytosol, peroxisome, plasma membrane 20.58 34.67
CDY21035 Canola plasma membrane 33.84 34.61
CDY15967 Canola plasma membrane 33.67 34.49
CDY69100 Canola plasma membrane 19.39 34.34
CDY44319 Canola plasma membrane 27.38 34.18
CDY38765 Canola plasma membrane 37.41 33.85
CDY38629 Canola plasma membrane 27.38 33.61
CDY15100 Canola plasma membrane 31.29 31.51
CDX91126 Canola plastid 31.8 30.06
CDX85654 Canola cytosol, plasma membrane, plastid 31.63 29.9
Protein Annotations
MapMan:24.2.2.9GO:A0A078IJV0UniProt:A0A078IJV0EnsemblPlants:CDY50182ProteinID:CDY50182ProteinID:CDY50182.1
GO:GO:0003674GO:GO:0005215GO:GO:0005575GO:GO:0006810GO:GO:0008150GO:GO:0016020
GO:GO:0016021GO:GO:0022857GO:GO:0055085EnsemblPlantsGene:GSBRNA2T00096107001InterPro:MFS_trans_sfPFAM:PF00854
InterPro:POT_famPANTHER:PTHR11654PANTHER:PTHR11654:SF198SUPFAM:SSF103473TMHMM:TMhelixUniParc:UPI0004EF3311
SEG:seg:::::
Description
BnaCnng18870DBnaCnng18870D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IJV0]
Coordinates
chrLK032887:+:56717..65459
Molecular Weight (calculated)
65612.9 Da
IEP (calculated)
9.706
GRAVY (calculated)
0.186
Length
588 amino acids
Sequence
(BLAST)
001: MNRSKKNQSR NHITYFRGRP CRQDKHGGTR AALFVLGLQA FEMMAIAAVG NNLITYVFNE MHLPLSKAAN LVTNFIGTVF LLSLLGGFLS DSYLESFRTM
101: LVFGVIEISG FILLSVQAHL PQLRPPECNM KNTTTHCLEA NGYKAATLYA ALCLVALGSG CLKPNIISHG ADQFQRKDLR KLSSFFNAAY FAFSMGQLIA
201: LTLLVWVQTH SGMDIGFGVS AAVMAAGMIS LAAGTNFYRN KPPRGSIFTP IAQVFVAAIT KRKQICPSNP NTLHQPSTDL VGVKPLLHSN KFRFLDKACI
301: KTQGKARESP WRLCTVEQVH QVKILLSVIP IFACTIIFNT ILAQLQTFSV QQGSSMDTHI TKTFQIPPAS LQAIPYIILI FVVPLYETFF VPLARKLTGN
401: DSGISPLQRI GTGLFLATFS MVAAALVEKK RRESFLEQNV TLSIFWIAPQ FLIFGLSEMF TAVGLVEFFY KQSSQSMQSF LTAMTYCSYS FGFYLSSVLV
501: STVNKVTSSN GSWTREGWLG DNDLNKDRLD LFYWLLASLS FVNFFNYLFW SRWYSFCPSA THHRAEVNSL EDVEDGANKD SKMEKPRI
Best Arabidopsis Sequence Match ( AT1G33440.1 )
(BLAST)
001: MDVHDLSEEA KRGVIHTSEE SLDDLCVDFR GRPCRPSKHG GTRAALFVLG FQAFEMMAIA AVGNNLITYV FNEMHFPLSK SANLVTNFIG TVFLLSLLGG
101: FLSDSYLGSF RTMLVFGVIE ISGFILLSVQ AHLPELRPPE CNMKSTTIHC VEANGYKAAT LYTALCLVAL GSGCLKPNII SHGANQFQRK DLRKLSSFFN
201: AAYFAFSMGQ LIALTLLVWV QTHSGMDVGF GVSAAVMAAG MISLVAGTSF YRNKPPSGSI FTPIAQVFVA AITKRKQICP SNPNMVHQPS TDLVRVKPLL
301: HSNKFRFLDK ACIKTQGKAM ESPWRLCTIE QVHQVKILLS VIPIFACTII FNTILAQLQT FSVQQGSSMN THITKTFQIP PASLQAIPYI ILIFFVPLYE
401: TFFVPLARKL TGNDSGISPL QRIGTGLFLA TFSMVAAALV EKKRRESFLE QNVMLSIFWI APQFLIFGLS EMFTAVGLVE FFYKQSSQSM QSFLTAMTYC
501: SYSFGFYLSS VLVSTVNRVT SSNGSGTKEG WLGDNDLNKD RLDHFYWLLA SLSFINFFNY LFWSRWYSCD PSATHHSAEV NSLEALENGE IKDSTTEKPR
601: I
Arabidopsis Description
NPF4.4Protein NRT1/ PTR FAMILY 4.4 [Source:UniProtKB/Swiss-Prot;Acc:Q56XQ6]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.