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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome, golgi, plasma membrane

Predictor Summary:
  • plastid 1
  • mitochondrion 1
  • golgi 2
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 2
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:golgi, peroxisome, plasma membrane
Any Predictor:golgi, peroxisome, plasma membrane, plastid
BaCelLo:plastid
iPSORT:mitochondrion
MultiLoc:golgi
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:peroxisome
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY65523 Canola plastid 57.02 83.95
CDY45147 Canola mitochondrion 57.44 82.53
Bra035429.1-P Field mustard plasma membrane 96.44 77.44
AT1G59740.1 Thale cress plasma membrane 88.68 71.57
CDY67653 Canola peroxisome 45.7 60.06
PGSC0003DMT400053373 Potato cytosol, peroxisome, plasma membrane 70.65 55.7
Solyc01g103030.2.1 Tomato cytosol, peroxisome, plasma membrane 70.23 55.28
KRH51284 Soybean plasma membrane 64.78 54.5
VIT_12s0035g01820.t01 Wine grape golgi, peroxisome, plasma membrane 68.97 53.93
KRH01875 Soybean plasma membrane 59.96 53.06
KRH26263 Soybean cytosol, peroxisome, plasma membrane 67.09 52.29
CDY50182 Canola plasma membrane 62.68 50.85
CDX93764 Canola plasma membrane 63.1 50.17
CDY70795 Canola plasma membrane 32.29 48.73
TraesCS2D01G307400.1 Wheat plasma membrane 58.7 48.11
TraesCS2B01G326200.1 Wheat plasma membrane 58.49 48.1
TraesCS2A01G309100.1 Wheat plasma membrane 58.49 48.1
EES12219 Sorghum plasma membrane 56.81 46.01
Os04t0441800-01 Rice plasma membrane 58.7 45.83
Zm00001d003603_P001 Maize plasma membrane 56.6 45.76
KXG24751 Sorghum peroxisome, plasma membrane, vacuole 53.25 42.19
Zm00001d049349_P001 Maize mitochondrion 51.99 34.59
CDY11649 Canola cytosol, peroxisome, plasma membrane 36.9 29.58
CDY40278 Canola plasma membrane 35.85 29.28
CDY28437 Canola plasma membrane 35.64 29.11
CDY15763 Canola plasma membrane 29.56 28.83
CDX84348 Canola plasma membrane 33.12 28.01
CDY52286 Canola plasma membrane 29.98 27.71
CDY04575 Canola plasma membrane 29.98 27.61
CDY00323 Canola plasma membrane 32.49 27.48
CDY38765 Canola plasma membrane 36.9 27.08
CDY26539 Canola plasma membrane 32.49 27.0
CDY31242 Canola plasma membrane 32.49 26.96
CDY45207 Canola golgi, plasma membrane 33.12 26.92
CDX71495 Canola plasma membrane 33.75 26.83
CDY15967 Canola plasma membrane 32.29 26.83
CDY52284 Canola plasma membrane 28.93 26.8
CDY21035 Canola plasma membrane 32.29 26.78
CDY30787 Canola mitochondrion 33.54 26.62
CDY44319 Canola plasma membrane 26.0 26.33
CDY38629 Canola plasma membrane 26.0 25.89
HORVU2Hr1G076880.23 Barley golgi, peroxisome 31.24 25.38
CDX91126 Canola plastid 31.03 23.79
CDX85654 Canola cytosol, plasma membrane, plastid 31.03 23.79
CDY15100 Canola plasma membrane 28.93 23.63
CDY30051 Canola cytosol, peroxisome, plasma membrane 17.19 23.5
CDY40277 Canola plasma membrane 12.37 23.14
CDY69100 Canola plasma membrane 14.88 21.39
Protein Annotations
Gene3D:1.20.1250.20MapMan:24.2.2.9GO:A0A078I9R2UniProt:A0A078I9R2EnsemblPlants:CDY45893ProteinID:CDY45893
ProteinID:CDY45893.1GO:GO:0003674GO:GO:0005215GO:GO:0005575GO:GO:0006810GO:GO:0008150
GO:GO:0016020GO:GO:0016021GO:GO:0022857GO:GO:0055085EnsemblPlantsGene:GSBRNA2T00082877001InterPro:MFS_trans_sf
PFAM:PF00854InterPro:POT_famPANTHER:PTHR11654PANTHER:PTHR11654:SF187SUPFAM:SSF103473TMHMM:TMhelix
UniParc:UPI0004EBA57DSEG:seg::::
Description
BnaC01g28290DBnaC01g28290D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I9R2]
Coordinates
chrLK032640:+:188356..192091
Molecular Weight (calculated)
53210.0 Da
IEP (calculated)
10.180
GRAVY (calculated)
0.220
Length
477 amino acids
Sequence
(BLAST)
001: MEKGNKESKK WVHGFILLSV QAHLSQLKPP KCNPLINQSS CEEAKGFKAI IFFTALYLVA LGSGCVKPNM IAHGADQFSH QSHPKQSKRL SSYFNAAYFA
101: FSIGELIALS LLVWIQTHSG MDVGFGVSAA AMTMGLISLV SGTTYFRNKR PRRSIFTPIA QVVVAAILKR KLASPSDPKM LNGGHRVTSD VVHSSTLPYT
201: PRLRFLDKAC TKIQDTNTKE SPWRLCTVTQ VEQVKTLISL VPVLASTIVF DTILAFSVQQ GSSMNTRLSN SFHIPPASLQ AIPYIMLIFL VPLYDSLFVP
301: FARKLTGHSS GIPPLTRIGV GLFLSTFSMV SAAFLEKKRR YSSVIDGRIL SIFWITPQFL IFGISEMFTA VGLIEFFYKQ TTMGMESFLM SLTYCSYSFG
401: FYFSSVLVSI VNKITSTSAD SKGWLGENDL NKDRLDLFYW LLAVLSLLNF ISYLFWSRWN VKSLRNNNSN VVGDEKI
Best Arabidopsis Sequence Match ( AT1G59740.1 )
(BLAST)
001: MAEINKQSNK WEQEEVSNEN NWELAEEESV DWRGRPSNPN KHGGMRAALF VLGLQAFEIM GIAAVGNNLI TYVINEMHFP LSKAANIVTN FVGTIFIFAL
101: LGGYLSDAFL GSFWTIIIFG FVELSGFILL SVQAHLPQLK PPKCNPLIDQ TCEEAKGFKA MIFFMALYLV ALGSGCVKPN MIAHGADQFS QSHPKQSKRL
201: SSYFNAAYFA FSMGELIALT LLVWVQTHSG MDIGFGVSAA AMTMGIISLV SGTMYFRNKR PRRSIFTPIA HVIVAAILKR KLASPSDPRM LHGDHHVAND
301: VVPSSTLPHT PRFRFLDKAC IKIQDTNTKE SPWRLCTVTQ VEQVKTLISL VPIFASTIVF NTILAQLQTF SVQQGSSMNT RLSNSFHIPP ASLQAIPYIM
401: LIFLVPLYDS FLVPFARKLT GHNSGIPPLT RIGIGLFLST FSMVSAAMLE KKRRDSSVLD GRILSIFWIT PQFLIFGISE MFTAVGLIEF FYKQSAKGME
501: SFLMALTYCS YSFGFYFSSV LVSVVNKITS TSVDSKGWLG ENDLNKDRLD LFYWLLAVLS LLNFLSYLFW SRWNIKSSRR NNTNVVGDEN I
Arabidopsis Description
NPF4.3Protein NRT1/ PTR FAMILY 4.3 [Source:UniProtKB/Swiss-Prot;Acc:Q93VV5]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.