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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • cytosol 1
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 3
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, nucleus, plasma membrane
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY00323 Canola plasma membrane 96.45 96.45
AT5G62730.1 Thale cress plasma membrane 89.89 86.08
KRH03418 Soybean plasma membrane 66.13 64.09
KRH56961 Soybean plasma membrane 65.6 63.46
CDY40277 Canola plasma membrane 28.19 62.35
CDY11649 Canola cytosol, peroxisome, plasma membrane 64.54 61.18
VIT_17s0000g05640.t01 Wine grape cytosol, plasma membrane, plastid 65.96 60.98
PGSC0003DMT400065182 Potato plasma membrane 63.48 60.78
GSMUA_Achr7P08880_001 Banana plasma membrane 59.57 60.76
Os06t0581000-01 Rice plasma membrane 62.06 59.32
Zm00001d046383_P001 Maize plasma membrane 62.06 59.12
EER89980 Sorghum plasma membrane 62.59 58.64
CDY40278 Canola plasma membrane 60.46 58.39
TraesCS7A01G365100.1 Wheat plasma membrane 60.11 57.75
CDY28437 Canola plasma membrane 59.75 57.71
Zm00001d036942_P001 Maize plasma membrane 55.14 57.59
Zm00001d036941_P001 Maize plasma membrane 61.17 56.65
GSMUA_Achr2P16840_001 Banana plasma membrane, plastid 60.28 56.38
CDY38765 Canola plasma membrane 64.18 55.69
TraesCS7D01G357300.2 Wheat plasma membrane 59.93 54.69
GSMUA_Achr6P00820_001 Banana plasma membrane 60.64 54.11
HORVU7Hr1G086170.5 Barley cytosol, peroxisome, plastid 59.93 53.57
Solyc03g113250.2.1 Tomato plasma membrane 57.62 53.28
TraesCS7B01G262200.1 Wheat plasma membrane, plastid 60.46 49.42
CDY52286 Canola plasma membrane 36.7 40.12
CDY52284 Canola plasma membrane 36.35 39.81
CDY04575 Canola plasma membrane 36.35 39.58
CDY15763 Canola plasma membrane 33.87 39.06
CDX93764 Canola plasma membrane 38.48 36.17
CDY50182 Canola plasma membrane 37.41 35.88
CDY65523 Canola plastid 20.57 35.8
CDY45147 Canola mitochondrion 20.74 35.24
CDY15100 Canola plasma membrane 36.35 35.1
CDY45893 Canola golgi, peroxisome, plasma membrane 28.01 33.12
CDY45207 Canola golgi, plasma membrane 34.04 32.71
CDY44319 Canola plasma membrane 27.3 32.7
CDX71495 Canola plasma membrane 34.75 32.67
CDY30787 Canola mitochondrion 34.75 32.61
CDY38629 Canola plasma membrane 27.3 32.15
CDY70795 Canola plasma membrane 17.91 31.96
CDY26539 Canola plasma membrane 32.27 31.71
CDY15967 Canola plasma membrane 32.27 31.71
CDY21035 Canola plasma membrane 32.27 31.65
CDY69100 Canola plasma membrane 18.62 31.63
CDY31242 Canola plasma membrane 32.09 31.48
CDY30051 Canola cytosol, peroxisome, plasma membrane 19.33 31.23
CDY67653 Canola peroxisome 18.79 29.2
CDX91126 Canola plastid 30.14 27.33
CDX85654 Canola cytosol, plasma membrane, plastid 29.96 27.17
Protein Annotations
Gene3D:1.20.1250.20MapMan:11.1.4.1MapMan:24.2.2.9GO:A0A078DAH9EnsemblPlants:CDX84348ProteinID:CDX84348
ProteinID:CDX84348.1GO:GO:0003674GO:GO:0005215GO:GO:0005575GO:GO:0006810GO:GO:0008150
GO:GO:0016020GO:GO:0022857GO:GO:0055085EnsemblPlantsGene:GSBRNA2T00141474001InterPro:IPR020846InterPro:MFS_dom
InterPro:MFS_trans_sfPFAM:PF00854InterPro:POT_famPANTHER:PTHR11654PANTHER:PTHR11654:SF184SUPFAM:SSF103473
TMHMM:TMhelixUniParc:UPI0004EEC1BBSEG:seg:::
Description
BnaC03g51520D
Coordinates
chrLK031837:+:177268..179814
Molecular Weight (calculated)
62377.2 Da
IEP (calculated)
9.185
GRAVY (calculated)
0.359
Length
564 amino acids
Sequence
(BLAST)
001: MTMSLEIQQM DEANRLSVWN GYVDWRNRPA LRGYHGGMLA ASFVLVVEVL ENLAFLANAS NLVLYLSTKM GFSPSGAANA VTAFMGTAFF LALLGGFLAD
101: AFFTTFHIYL VSAAIEFLGL LVLTVQAHEH STEPWARVVL YVGLYLVALG VGGIKGSLPP HGAEQFDETT PSGRRQRSFF FNYFIFSLSC GALIAVTVVV
201: WLEDNKGWSY GFGVSTAAIL ISVPVFLAGS RFYRLKVPSG SPITTLFKVL TAALYAKYKK RTSRNVVTCH TRNECKDNIA KGNGERDGSF LDEAVRERDS
301: LPRPLRCTEE QVKDVKIVIK TLPIFMSTIM LNCCLAQLST FSIQQASTMN TKLGSLTVPP AALPVFPVVF TMILAPTYNH LLLPLARKTT KTETGVTHLQ
401: RIGTGLVLSV VAMAVAALVE MKRKLVVKEV TCCSSINASS SYSSPLPITF LWIALQYVFL GSADLFTLAG MMEFFFTEAP STMRSLATSL SWTSLAMGYY
501: LSSVLVSAVN FFTGLNQDTP WLLGKNLNEY HLERFYWLMC VLSGINFLNY LFWARRYAYR SNQS
Best Arabidopsis Sequence Match ( AT5G62730.1 )
(BLAST)
001: MSTNYTAINH ILHFHSPNSC FLMIMSLEFE QMDEANRLSA WNGYVDWRSR PALRGRHGGM LAASFVLVVE VLENLAFLAN ASNLVLYLST KMGFSPSGAA
101: NAVTAFMGTA FFLALLGGFL ADAFFTTFHI YLVSAAIEFL GLMVLTVQAH EHSTEPWSRV FLFVGLYLVA LGVGGIKGSL PPHGAEQFDE ETSSGRRQRS
201: FFFNYFIFSL SCGALIAVTV VVWLEDNKGW SYGFGVSTAA ILISVPVFLA GSRVYRLKVP SGSPITTLFK VLTAALYAKY KKRRTSRIVV TCHTRNDCDD
301: SVTKQNCDGD DGFLGSFLGE VVRERESLPR PLRCTEEQVK DVKIVIKILP IFMSTIMLNC CLAQLSTFSV QQASTMNTKL GSFTVPPAAL PVFPVVFMMI
401: LAPTYNHLLL PLARKSTKTE TGITHLQRIG TGLVLSIVAM AVAALVETKR KHVVVSCCSN NNSSSYSSSP LPITFLWVAI QYVFLGSADL FTLAGMMEFF
501: FTEAPSTMRS LATSLSWASL AMGYYFSSVL VSAVNFVTGL NHHNPWLLGE NLNQYHLERF YWLMCVLSGI NFLHYLFWAS RYVYRSNQG
Arabidopsis Description
NPF4.7Protein NRT1/ PTR FAMILY 4.7 [Source:UniProtKB/Swiss-Prot;Acc:Q9FM20]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.