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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:
  • nucleus 1
  • cytosol 1
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 2
  • golgi 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, peroxisome, plasma membrane
Any Predictor:cytosol, nucleus, peroxisome
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:peroxisome
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
AT1G69850.1 Thale cress plasma membrane 89.92 91.45
CDY38765 Canola plasma membrane 98.32 90.0
CDY40277 Canola plasma membrane 33.28 77.65
CDY40278 Canola plasma membrane 74.79 76.2
CDY28437 Canola plasma membrane 73.95 75.34
GSMUA_Achr7P08880_001 Banana plasma membrane 65.04 69.98
Os06t0581000-01 Rice plasma membrane 65.71 66.27
Zm00001d046383_P001 Maize plasma membrane 65.38 65.71
TraesCS7A01G365100.1 Wheat plasma membrane 64.03 64.91
CDX84348 Canola plasma membrane 61.18 64.54
EER89980 Sorghum plasma membrane 65.21 64.45
CDY00323 Canola plasma membrane 61.01 64.36
Zm00001d036942_P001 Maize plasma membrane 57.31 63.15
TraesCS7D01G357300.2 Wheat plasma membrane 64.87 62.46
Zm00001d036941_P001 Maize plasma membrane 63.36 61.9
GSMUA_Achr2P16840_001 Banana plasma membrane, plastid 62.52 61.69
HORVU7Hr1G086170.5 Barley cytosol, peroxisome, plastid 65.04 61.33
GSMUA_Achr6P00820_001 Banana plasma membrane 63.36 59.65
TraesCS7B01G262200.1 Wheat plasma membrane, plastid 65.04 56.09
CDY52284 Canola plasma membrane 36.64 42.33
CDY52286 Canola plasma membrane 36.3 41.86
CDY15763 Canola plasma membrane 33.61 40.9
CDY04575 Canola plasma membrane 35.46 40.73
CDY65523 Canola plastid 20.84 38.27
CDY45147 Canola mitochondrion 21.01 37.65
CDY50182 Canola plasma membrane 36.97 37.41
CDX93764 Canola plasma membrane 37.48 37.17
CDY15100 Canola plasma membrane 36.3 36.99
CDY45893 Canola golgi, peroxisome, plasma membrane 29.58 36.9
CDY45207 Canola golgi, plasma membrane 35.46 35.95
CDY30051 Canola cytosol, peroxisome, plasma membrane 21.01 35.82
CDY15967 Canola plasma membrane 34.29 35.54
CDY26539 Canola plasma membrane 34.29 35.54
CDX71495 Canola plasma membrane 35.8 35.5
CDY44319 Canola plasma membrane 28.07 35.46
CDY30787 Canola mitochondrion 35.8 35.44
CDY38629 Canola plasma membrane 28.07 34.86
CDY70795 Canola plasma membrane 18.49 34.81
CDY31242 Canola plasma membrane 33.61 34.78
CDY21035 Canola plasma membrane 33.61 34.78
CDY69100 Canola plasma membrane 18.82 33.73
CDY67653 Canola peroxisome 20.0 32.78
CDX91126 Canola plastid 31.76 30.39
CDX85654 Canola cytosol, plasma membrane, plastid 31.6 30.23
Protein Annotations
Gene3D:1.20.1250.20MapMan:11.1.4.1MapMan:24.2.2.9GO:A0A078FFB7UniProt:A0A078FFB7EnsemblPlants:CDY11649
ProteinID:CDY11649ProteinID:CDY11649.1ncoils:CoilGO:GO:0003674GO:GO:0005215GO:GO:0005575
GO:GO:0006810GO:GO:0008150GO:GO:0016020GO:GO:0016021GO:GO:0022857GO:GO:0055085
EnsemblPlantsGene:GSBRNA2T00049790001InterPro:MFS_trans_sfPFAM:PF00854InterPro:POT_famPANTHER:PTHR11654PANTHER:PTHR11654:SF98
SUPFAM:SSF103473TMHMM:TMhelixUniParc:UPI0004EE1533SEG:seg::
Description
BnaC06g30900DBnaC06g30900D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FFB7]
Coordinates
chrLK032012:+:796085..800935
Molecular Weight (calculated)
65538.3 Da
IEP (calculated)
8.783
GRAVY (calculated)
0.317
Length
595 amino acids
Sequence
(BLAST)
001: MLPNNMIERK KERIMEVEEE VSRWEGYADW RNKAAVKGRH GGMLAASFTL VVEILENLAY LANASNLVLY LREYMHLSPS KSANDVTNFM GTAFLLALLG
101: GFLSDAFFST YVIFLISASI EFLGLIILTI QARTPSLMPP TCDGPTCEAV SGSKAVTLFV GLYLVALGVG GIKGSLPSHG AEQFDESTPK GRKQRSTYFN
201: YFVFCLACGA LVAVTFVVWL EDNKGWEWGF GVSTIAIFVS ILIFLSGSKF YRNKIPCGSP LTTILKVLLA ASVKSCSNGS PSNAVVNLAI SPSNHLKEVT
301: ESGELEKPRH QEPVPPPQTQ LTNSLRFLNR AAEEKPDHKL LECTIQQVED VKIVLKMLPI FACTIMLNCC LAQLSTFSVQ QAASMNTKIG SLKIPPASLP
401: VFPVVFIMIL APIYDHLIIP FARKTTKTET GVTHLQRIGV GLVLSILAMA VAALVEIKRK GVAKDAGLLD SKETLPITFL WIALQYLFLG SADLFTLAGL
501: LEYFFTEAPA SMRSLATSLS WASLAMGYYL SSVIVSIVNS ITGSSGNTPW LRGERINRYK LDYFYWLMCV LSAANFLHYL FWAMRYKYRS TGSRS
Best Arabidopsis Sequence Match ( AT1G69850.1 )
(BLAST)
001: MEVEEEVSRW EGYADWRNRA AVKGRHGGML AASFVLVVEI LENLAYLANA SNLVLYLREY MHMSPSKSAN DVTNFMGTAF LLALLGGFLS DAFFSTFQIF
101: LISASIEFLG LIILTIQART PSLMPPSCDS PTCEEVSGSK AAMLFVGLYL VALGVGGIKG SLASHGAEQF DESTPKGRKQ RSTFFNYFVF CLACGALVAV
201: TFVVWLEDNK GWEWGFGVST IAIFVSILIF LSGSRFYRNK IPCGSPLTTI LKVLLAASVK CCSSGSSSNA VASMSVSPSN HCVSKGKKEV ESQGELEKPR
301: QEEALPPRAQ LTNSLKVLNG AADEKPVHRL LECTVQQVED VKIVLKMLPI FACTIMLNCC LAQLSTFSVQ QAASMNTKIG SLKIPPASLP IFPVVFIMIL
401: APIYDHLIIP FARKATKTET GVTHLQRIGV GLVLSILAMA VAALVEIKRK GVAKDSGLLD SKETLPVTFL WIALQYLFLG SADLFTLAGL LEYFFTEAPS
501: SMRSLATSLS WASLAMGYYL SSVIVSIVNS ITGSSGNTPW LRGKSINRYK LDYFYWLMCV LSAANFLHYL FWAMRYKYRS TGSRS
Arabidopsis Description
NPF4.6Protein NRT1/ PTR FAMILY 4.6 [Source:UniProtKB/Swiss-Prot;Acc:Q8H157]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.