CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 3
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra013221.1-P	Field mustard	plasma membrane	99.42	99.42
CDY52284	Canola	plasma membrane	92.25	92.43
CDY15100	Canola	plasma membrane	90.5	79.97
AT3G25260.1	Thale cress	plasma membrane	79.46	79.61
CDY04575	Canola	plasma membrane	64.92	64.67
CDY15763	Canola	plasma membrane	60.85	64.21
CDY40277	Canola	plasma membrane	20.16	40.78
CDY00323	Canola	plasma membrane	40.31	36.88
CDX84348	Canola	plasma membrane	40.12	36.7
CDY11649	Canola	cytosol, peroxisome, plasma membrane	41.86	36.3
CDY40278	Canola	plasma membrane	40.89	36.13
CDY28437	Canola	plasma membrane	40.89	36.13
CDY38765	Canola	plasma membrane	41.67	33.08
CDY65523	Canola	plastid	20.35	32.41
CDY45147	Canola	mitochondrion	20.74	32.23
CDY69100	Canola	plasma membrane	20.74	32.23
CDY50182	Canola	plasma membrane	36.43	31.97
CDX93764	Canola	plasma membrane	37.02	31.83
CDY30051	Canola	cytosol, peroxisome, plasma membrane	21.51	31.81
CDY21035	Canola	plasma membrane	34.69	31.13
CDY31242	Canola	plasma membrane	34.5	30.96
CDY26539	Canola	plasma membrane	33.91	30.49
CDY15967	Canola	plasma membrane	33.91	30.49
CDY70795	Canola	plasma membrane	18.41	30.06
CDY45893	Canola	golgi, peroxisome, plasma membrane	27.71	29.98
CDY45207	Canola	golgi, plasma membrane	33.72	29.64
CDY30787	Canola	mitochondrion	34.3	29.45
CDX71495	Canola	plasma membrane	34.11	29.33
CDY67653	Canola	peroxisome	19.77	28.1
CDY44319	Canola	plasma membrane	24.42	26.75
CDY38629	Canola	plasma membrane	24.42	26.3
CDX91126	Canola	plastid	31.01	25.72
CDX85654	Canola	cytosol, plasma membrane, plastid	30.81	25.56

Protein Annotations

Gene3D:1.20.1250.20	MapMan:11.1.4.1	MapMan:24.2.2.9	GO:A0A078IQW0	UniProt:A0A078IQW0	EnsemblPlants:CDY52286
ProteinID:CDY52286	ProteinID:CDY52286.1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0022857	GO:GO:0055085	EnsemblPlantsGene:GSBRNA2T00006694001
InterPro:IPR020846	InterPro:MFS_dom	InterPro:MFS_trans_sf	PFAM:PF00854	InterPro:POT_fam	PANTHER:PTHR11654
PANTHER:PTHR11654:SF165	SUPFAM:SSF103473	TMHMM:TMhelix	UniParc:UPI0004EE75B2	SEG:seg	:

Description

BnaA03g57790DBnaA03g57790D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IQW0]

Coordinates

chrLK033075:+:33749..36462

Molecular Weight (calculated)

57519.0 Da

IEP (calculated)

9.025

GRAVY (calculated)

0.308

Length

516 amino acids

Sequence
(BLAST)

001: MQNEMEEKFE DWRGKEATPG KHGGIKAASI ACVVEMMENM VFLACSTNFI TYFTKSWHYS PAKASNMVTN FTGTSFLLTI FGGFVADSFL TRFTAFVIFC
101: SIELLGLILL TIQAHIPKLQ PQGDSTPSTL QSVVLFTGLY AVATGVGGVK ASLPAHGGDQ LDSRNQKLIS GFFSWYFFSL CFGGFLAVTI MVWIEENKGW
201: SSSFDICTVI LASALFIFTV GFPMYRFRRP TGSPLTRIVN VFVSAARNRN RFVADAEMTQ NHNSTDKSIH HNKFKFLNKA KLNNNISATE VEETRTFLAL
301: LPIFASTIVM NCCLAQLSTY SVQQGMLMNK KLTQSFEVPP ASLNAIALLL LLFSIAFYEL FGKRISSSNN ERSTSFNLKR IGAGLALTSV SMAIAAIVEA
401: KRKHELVHNN IKISLFWLEF QYVLLCFSDM LTLGGMLEFF YRESPASMKS ISTALGWFST ALGFFLSTVL VDITKAVTGW LDGKDVNGSR LELFYAVLCV
501: LNTINLFNYI FWAKRY

Best Arabidopsis Sequence Match ( AT3G25260.1 )
(BLAST)

001: MQIEMEEKFE DWRGKEAISG KHGGIKAAFI ACVVETMENM VFLACSTNFM MYFTKSMNYS TPKAATMVTN FVGTSFLLTI FGGFVADSFL TRFAAFVLFG
101: SIELLGLIML TLQAHITKLQ PQGGKKPSTP QSTVLFTGLY AIAIGVGGVK GSLPAHGGDQ IGTRNQRLIS GFFNWYFFSV CLGGFLAVTL MVWIEENIGW
201: SSSFTISTAV LASAIFVFVA GCPMYRFKRP AGSPLTRIVN VFVSAARNRN RFVTDAEVVT QNHNSTDKSI HHNKFKFLNK AKLNNKISAT QVEETRTFLA
301: LLPIFGSTII MNCCVAQMGT FSVQQGMVTN RKLSRSFEIP VASLNAIPLL CMLSSLALYE LFGKRILSNS ERSSSFNLKR IGYGLALTSI SMAVAAIVEV
401: KRKHEAVHNN IKISVFWLEL QFVMLSLSDM LTVGGMLEFF FRESPASMRS MSTALGWCST AMGFFLSSVL VEVVNGITGW LRDDLNESRL ELFYLVLCVL
501: NTLNLFNYIF WAKRY

Arabidopsis Description

NPF4.1Protein NRT1/ PTR FAMILY 4.1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSF0]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.