Factsheet for Bra013221.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
vacuole 2
extracellular 1
endoplasmic reticulum 1
plasma membrane 3
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	vacuole
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY52286	Canola	plasma membrane	99.42	99.42
Bra013222.1-P	Field mustard	plasma membrane	91.86	92.04
AT3G25260.1	Thale cress	plasma membrane	79.46	79.61
Bra011937.1-P	Field mustard	plasma membrane	64.73	64.48
Bra012431.1-P	Field mustard	plasma membrane	19.96	40.39
Bra010117.1-P	Field mustard	plasma membrane	39.92	37.12
Bra019744.1-P	Field mustard	plasma membrane	18.22	35.07
Bra028002.1-P	Field mustard	peroxisome	37.21	32.0
Bra027836.1-P	Field mustard	plasma membrane	37.02	31.68
Bra016789.1-P	Field mustard	plasma membrane	36.05	31.53
Bra035429.1-P	Field mustard	plasma membrane	36.24	31.48
Bra026991.1-P	Field mustard	plasma membrane	35.47	31.07
Bra031295.1-P	Field mustard	plasma membrane	33.33	29.45
Bra023868.1-P	Field mustard	plasma membrane	32.75	29.24
Bra012052.1-P	Field mustard	plasma membrane	28.68	28.41
Bra023408.1-P	Field mustard	plastid	30.43	25.24

Protein Annotations

Gene3D:1.20.1250.20	MapMan:11.1.4.1	MapMan:24.2.2.9	EnsemblPlantsGene:Bra013221	EnsemblPlants:Bra013221.1	EnsemblPlants:Bra013221.1-P
GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020
GO:GO:0016021	GO:GO:0022857	GO:GO:0055085	InterPro:IPR020846	UniProt:M4D9R1	InterPro:MFS_dom
InterPro:MFS_trans_sf	PFAM:PF00854	InterPro:POT_fam	PANTHER:PTHR11654	PANTHER:PTHR11654:SF165	SUPFAM:SSF103473
TMHMM:TMhelix	UniParc:UPI000254088F	SEG:seg	:	:	:

Description

AT3G25260 (E=7e-223) | proton-dependent oligopeptide transport (POT) family protein

Coordinates

chrA03:+:19790611..19793273

Molecular Weight (calculated)

57515.0 Da

IEP (calculated)

9.023

GRAVY (calculated)

0.309

Length

516 amino acids

Sequence
(BLAST)

001: MQNEMEEKFE DWRGKEATPG KHGGIKAASI ACVVEMMENM VFLACSTNFI TYFTKSWHYS SAKASNMVTN FTGTSFLLTI FGGFVADSFL TRFTAFVIFC
101: SIELLGLILL TIQAHIPKLQ PQGDSTPSTL QSVVLFTGLY AVATGVGGVK ASLPAHGGDQ LDSRNQKLIS GFFSWYFFSL CFGGFLAVTI MVWIEENKGW
201: SSSFDICTVI LASALFIFTV GFPMYRFKRP TGSPLTRIVN VFVSAARNRN RFVADAEMTQ NHNSTDKSIH HNKFKFLNKA KLNNNISATE VEETRTFLAL
301: LPIFASTIVM NCCLAQLSTY SVQQGMLMNK KLTQSFEVPP ASLNAIALLL LLFSIAFYEL FGKRISSSNN ERSTSFNFKR IGAGLALTSV SMAIAAIVEA
401: KRKHELVHNN IKISLFWLEF QYVLLCFSDM LTLGGMLEFF YRESPASMKS ISTALGWFST ALGFFLSTVL VDITKAVTGW LDGKDVNGSR LELFYAVLCV
501: LNTINLFNYI FWAKRY

Best Arabidopsis Sequence Match ( AT3G25260.1 )
(BLAST)

001: MQIEMEEKFE DWRGKEAISG KHGGIKAAFI ACVVETMENM VFLACSTNFM MYFTKSMNYS TPKAATMVTN FVGTSFLLTI FGGFVADSFL TRFAAFVLFG
101: SIELLGLIML TLQAHITKLQ PQGGKKPSTP QSTVLFTGLY AIAIGVGGVK GSLPAHGGDQ IGTRNQRLIS GFFNWYFFSV CLGGFLAVTL MVWIEENIGW
201: SSSFTISTAV LASAIFVFVA GCPMYRFKRP AGSPLTRIVN VFVSAARNRN RFVTDAEVVT QNHNSTDKSI HHNKFKFLNK AKLNNKISAT QVEETRTFLA
301: LLPIFGSTII MNCCVAQMGT FSVQQGMVTN RKLSRSFEIP VASLNAIPLL CMLSSLALYE LFGKRILSNS ERSSSFNLKR IGYGLALTSI SMAVAAIVEV
401: KRKHEAVHNN IKISVFWLEL QFVMLSLSDM LTVGGMLEFF FRESPASMRS MSTALGWCST AMGFFLSSVL VEVVNGITGW LRDDLNESRL ELFYLVLCVL
501: NTLNLFNYIF WAKRY

Arabidopsis Description

NPF4.1Protein NRT1/ PTR FAMILY 4.1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSF0]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.