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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • plastid 1
  • peroxisome 1
  • vacuole 2
  • extracellular 1
  • endoplasmic reticulum 1
  • plasma membrane 3
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:nucleus, peroxisome, plastid, secretory
BaCelLo:nucleus
EpiLoc:plastid
MultiLoc:peroxisome
Plant-mPloc:vacuole
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra010783.1-P
Bra032374.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G12110.1 Bra010783.1-P AT1G30270.1 19766570
AT1G12110.1 Bra032374.1-P AT1G30270.1 19766570
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY26539 Canola plasma membrane 97.11 99.65
CDY15967 Canola plasma membrane 96.26 98.78
Bra016789.1-P Field mustard plasma membrane 94.91 94.75
AT1G12110.1 Thale cress plasma membrane 91.17 91.02
Bra019744.1-P Field mustard plasma membrane 40.07 88.06
Solyc08g078950.2.1 Tomato cytosol, peroxisome, plasma membrane 67.74 67.63
PGSC0003DMT400012226 Potato cytosol, peroxisome, plasma membrane 67.57 67.46
PGSC0003DMT400032493 Potato cytosol, peroxisome, plasma membrane 67.23 67.12
Solyc08g007430.1.1 Tomato cytosol, peroxisome, plasma membrane 66.72 66.61
GSMUA_Achr8P11180_001 Banana peroxisome 61.46 63.62
KRH77380 Soybean cytosol, plasma membrane, plastid 63.16 63.48
KRH28055 Soybean plasma membrane 63.16 63.48
EES13374 Sorghum plasma membrane 64.01 62.73
GSMUA_Achr11P... Banana plasma membrane 60.27 62.61
GSMUA_Achr8P11190_001 Banana peroxisome 59.25 61.77
Zm00001d029932_P001 Maize plasma membrane 62.31 61.68
EER91957 Sorghum plasma membrane 61.97 61.34
VIT_02s0154g00260.t01 Wine grape plastid 67.06 61.34
Solyc06g060620.2.1 Tomato plasma membrane 61.29 60.98
Os08t0155400-01 Rice plasma membrane 54.16 60.76
Os10t0554200-02 Rice plasma membrane 61.46 60.74
Zm00001d024587_P001 Maize plasma membrane 62.65 60.69
Zm00001d029933_P001 Maize cytosol, peroxisome, plasma membrane 60.44 60.54
TraesCS1D01G214200.1 Wheat plasma membrane 60.95 60.23
TraesCS1B01G224900.1 Wheat plasma membrane 60.95 60.23
GSMUA_Achr1P20240_001 Banana plasma membrane 60.61 60.2
TraesCS7D01G297000.1 Wheat plasma membrane 61.63 60.2
TraesCS7B01G201900.1 Wheat plasma membrane 61.46 60.03
PGSC0003DMT400035882 Potato plasma membrane 60.27 59.97
KRH04097 Soybean peroxisome 60.44 59.93
TraesCS7A01G301700.1 Wheat plasma membrane 61.29 59.87
TraesCS1B01G225000.1 Wheat plasma membrane 60.27 59.66
TraesCS1A01G211000.1 Wheat cytosol 60.27 59.66
GSMUA_AchrUn_... Banana cytosol, peroxisome, plasma membrane 59.08 59.59
TraesCS1D01G214300.1 Wheat plasma membrane 59.93 59.33
GSMUA_Achr11P... Banana peroxisome 56.71 59.33
HORVU1Hr1G053990.4 Barley peroxisome 61.29 58.51
HORVU7Hr1G071600.2 Barley mitochondrion 61.63 58.45
Os03t0103000-01 Rice cytosol, peroxisome, plasma membrane 58.4 58.4
TraesCS4D01G361500.1 Wheat peroxisome 59.93 58.25
TraesCS1A01G210900.1 Wheat plasma membrane 47.54 57.97
TraesCS5A01G537100.1 Wheat peroxisome 59.93 57.96
TraesCS4B01G371000.1 Wheat peroxisome 58.91 57.55
OQU93471 Sorghum plasma membrane 59.08 57.52
KRH57369 Soybean plasma membrane 57.56 57.46
Zm00001d027285_P001 Maize cytosol, plasma membrane, vacuole 58.23 57.17
TraesCS4B01G375800.1 Wheat plasma membrane 58.91 57.17
HORVU4Hr1G088020.4 Barley nucleus, plasma membrane 59.42 56.36
GSMUA_Achr6P36750_001 Banana plasma membrane 60.95 54.31
Bra012052.1-P Field mustard plasma membrane 44.48 50.29
Bra023868.1-P Field mustard plasma membrane 46.69 47.58
Bra031295.1-P Field mustard plasma membrane 45.5 45.89
HORVU1Hr1G054020.3 Barley mitochondrion, peroxisome, plastid 42.44 45.79
Bra012431.1-P Field mustard plasma membrane 16.98 39.22
Bra011937.1-P Field mustard plasma membrane 32.09 36.49
Bra013222.1-P Field mustard plasma membrane 31.07 35.53
Bra013221.1-P Field mustard plasma membrane 31.07 35.47
Bra028002.1-P Field mustard peroxisome 35.99 35.33
Bra027836.1-P Field mustard plasma membrane 35.99 35.16
Bra035429.1-P Field mustard plasma membrane 34.97 34.68
Bra010117.1-P Field mustard plasma membrane 32.6 34.59
Bra023408.1-P Field mustard plastid 34.3 32.48
Protein Annotations
Gene3D:1.20.1250.20MapMan:24.2.2.9EnsemblPlantsGene:Bra026991EnsemblPlants:Bra026991.1EnsemblPlants:Bra026991.1-PGO:GO:0003674
GO:GO:0005215GO:GO:0005575GO:GO:0006810GO:GO:0006857GO:GO:0008150GO:GO:0016020
GO:GO:0016021GO:GO:0022857GO:GO:0055085UniProt:M4EDY1InterPro:MFS_trans_sfPFAM:PF00854
InterPro:POT_famScanProsite:PS01022ScanProsite:PS01023PANTHER:PTHR11654PANTHER:PTHR11654:SF78InterPro:PTR2_symporter_CS
SUPFAM:SSF103473TMHMM:TMhelixUniParc:UPI0002542905SEG:seg::
Description
AT1G12110 (E=2e-287) NRT1.1, CHL1-1, NRT1, B-1, ATNRT1, CHL1 | NRT1.1; nitrate transmembrane transporter/ transporter
Coordinates
chrA09:-:34649306..34653059
Molecular Weight (calculated)
64978.0 Da
IEP (calculated)
8.439
GRAVY (calculated)
0.362
Length
589 amino acids
Sequence
(BLAST)
001: MSLPETKTQT LLDAWDFQGR PADRSKTGGW ASAAMILCIE AVERLTTLGI GVNLVTYLTG TMHLGNATAA NTVTNFLGTS FMLCLLGGFI ADTFLGRYLT
101: IAIFAAIQAT GVSILTLSTI IPGLRPPRCD PTTSSHCVQA SGIQLTVLYL ALYLTALGTG GVKASVSGFG SDQFDDTEPK ERSQMTYFFN RFFFCINVGS
201: LMAVTVLVYI QDDVGRKWGY GICALAIVLS LSIFLAGTNR YRFKKLIGSP MTQVATVLVA AWRNRRLELP SDPSFLYDLD DVIAAEGSMK SKQKLPHTNQ
301: FRSLDKAAIK DQEMAMTQNV YNKWTLSTVT DIEEVKQIVR MLPIWATCIL FWTVHAQLTT LSVAQSETMD RHIGSFEIPP AAMAVFYIGG LLLTTAVYDR
401: LAIPLCKKLF NYPHGLRPLQ RIGLGLLLAA MGMAVAALVE IKRLRTAHAH GPTVKTLPLG FSLLIPQYLI VGIGEALIYT GQLDFFLREC PKGMKTMSTG
501: LLLSTLALGF FFSSVLVTIV EKVTDKAHPW IADDLNKGRL YNFYWLVAVI VALNFLVFLV FSKWYVYKEK RLADLGIELE DELDIPMGH
Best Arabidopsis Sequence Match ( AT1G12110.1 )
(BLAST)
001: MSLPETKSDD ILLDAWDFQG RPADRSKTGG WASAAMILCI EAVERLTTLG IGVNLVTYLT GTMHLGNATA ANTVTNFLGT SFMLCLLGGF IADTFLGRYL
101: TIAIFAAIQA TGVSILTLST IIPGLRPPRC NPTTSSHCEQ ASGIQLTVLY LALYLTALGT GGVKASVSGF GSDQFDETEP KERSKMTYFF NRFFFCINVG
201: SLLAVTVLVY VQDDVGRKWG YGICAFAIVL ALSVFLAGTN RYRFKKLIGS PMTQVAAVIV AAWRNRKLEL PADPSYLYDV DDIIAAEGSM KGKQKLPHTE
301: QFRSLDKAAI RDQEAGVTSN VFNKWTLSTL TDVEEVKQIV RMLPIWATCI LFWTVHAQLT TLSVAQSETL DRSIGSFEIP PASMAVFYVG GLLLTTAVYD
401: RVAIRLCKKL FNYPHGLRPL QRIGLGLFFG SMAMAVAALV ELKRLRTAHA HGPTVKTLPL GFYLLIPQYL IVGIGEALIY TGQLDFFLRE CPKGMKGMST
501: GLLLSTLALG FFFSSVLVTI VEKFTGKAHP WIADDLNKGR LYNFYWLVAV LVALNFLIFL VFSKWYVYKE KRLAEVGIEL DDEPSIPMGH
Arabidopsis Description
NPF6.3NRT1.1 [Source:UniProtKB/TrEMBL;Acc:A0A178W8F7]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.