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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, nucleus

Predictor Summary:
  • nucleus 1
  • plasma membrane 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus, plasma membrane
Any Predictor:nucleus, plasma membrane
MultiLoc:nucleus
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
HORVU2Hr1G060350.5

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G12110.1 HORVU2Hr1G060350.5 AT1G30270.1 19766570
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS5A01G537100.1 Wheat peroxisome 92.43 94.25
TraesCS4D01G361500.1 Wheat peroxisome 91.95 94.22
TraesCS4B01G371000.1 Wheat peroxisome 90.82 93.53
TraesCS4B01G375800.1 Wheat plasma membrane 90.82 92.92
OQU93471 Sorghum plasma membrane 76.01 78.02
Zm00001d027285_P001 Maize cytosol, plasma membrane, vacuole 74.72 77.33
Os03t0103000-01 Rice cytosol, peroxisome, plasma membrane 70.05 73.85
GSMUA_Achr8P11190_001 Banana peroxisome 63.77 70.09
HORVU1Hr1G053990.4 Barley peroxisome 68.76 69.21
GSMUA_Achr8P11180_001 Banana peroxisome 63.28 69.07
GSMUA_Achr11P... Banana plasma membrane 62.48 68.43
PGSC0003DMT400012226 Potato cytosol, peroxisome, plasma membrane 61.51 64.75
Solyc08g078950.2.1 Tomato cytosol, peroxisome, plasma membrane 61.35 64.58
HORVU7Hr1G071600.2 Barley mitochondrion 63.93 63.93
GSMUA_Achr11P... Banana peroxisome 57.65 63.59
PGSC0003DMT400032493 Potato cytosol, peroxisome, plasma membrane 59.74 62.88
Solyc08g007430.1.1 Tomato cytosol, peroxisome, plasma membrane 59.42 62.54
CDY30051 Canola cytosol, peroxisome, plasma membrane 35.1 62.46
KRH04097 Soybean peroxisome 59.58 62.29
VIT_02s0154g00260.t01 Wine grape plastid 63.77 61.49
Bra019744.1-P Field mustard plasma membrane 26.41 61.19
CDY69100 Canola plasma membrane 32.69 61.14
KRH28055 Soybean plasma membrane 57.33 60.75
AT1G12110.1 Thale cress plasma membrane 57.33 60.34
Solyc06g060620.2.1 Tomato plasma membrane 57.49 60.3
KRH77380 Soybean cytosol, plasma membrane, plastid 56.84 60.24
CDY15967 Canola plasma membrane 55.23 59.76
Bra026991.1-P Field mustard plasma membrane 56.36 59.42
PGSC0003DMT400035882 Potato plasma membrane 56.52 59.29
CDY26539 Canola plasma membrane 54.59 59.06
KRH57369 Soybean plasma membrane 56.04 58.98
Bra016789.1-P Field mustard plasma membrane 56.04 58.98
CDY21035 Canola plasma membrane 54.43 58.78
CDY31242 Canola plasma membrane 54.43 58.78
HORVU1Hr1G054020.3 Barley mitochondrion, peroxisome, plastid 50.4 57.33
HORVU1Hr1G004720.4 Barley plasma membrane 49.6 53.38
HORVU5Hr1G099170.6 Barley plasma membrane 46.54 47.38
HORVU2Hr1G065480.1 Barley golgi, plasma membrane 17.07 47.11
HORVU2Hr1G081050.1 Barley endoplasmic reticulum, extracellular 4.83 43.48
HORVU3Hr1G071510.1 Barley golgi, plasma membrane 33.01 35.9
HORVU4Hr1G015640.2 Barley golgi, peroxisome, plasma membrane 34.3 35.32
HORVU7Hr1G086170.5 Barley cytosol, peroxisome, plastid 35.27 34.71
HORVU3Hr1G014510.3 Barley plastid 35.1 33.44
HORVU5Hr1G095020.1 Barley plasma membrane 29.79 31.68
HORVU2Hr1G098210.2 Barley mitochondrion, plasma membrane 15.62 31.6
HORVU2Hr1G085210.21 Barley plasma membrane 28.18 31.19
HORVU2Hr1G062730.7 Barley plasma membrane 28.34 30.45
HORVU2Hr1G007730.1 Barley mitochondrion 15.3 26.99
HORVU2Hr1G085260.3 Barley plasma membrane 19.65 23.78
HORVU2Hr1G076880.23 Barley golgi, peroxisome 21.42 22.66
Protein Annotations
Gene3D:1.20.1250.20MapMan:24.2.2.9UniProt:A0A287Q1V4EMBL:AK374166GO:GO:0003674GO:GO:0005215
GO:GO:0005575GO:GO:0006810GO:GO:0006857GO:GO:0008150GO:GO:0016020GO:GO:0016021
GO:GO:0022857GO:GO:0055085EnsemblPlantsGene:HORVU4Hr1G088020EnsemblPlants:HORVU4Hr1G088020.4InterPro:MFS_trans_sfPFAM:PF00854
InterPro:POT_famScanProsite:PS01022PANTHER:PTHR11654PANTHER:PTHR11654:SF142InterPro:PTR2_symporter_CSSUPFAM:SSF103473
TMHMM:TMhelixUniParc:UPI000B4824F3SEG:seg:::
Description
No Description!
Coordinates
chrchr4H:+:639208559..639213648
Molecular Weight (calculated)
66365.8 Da
IEP (calculated)
9.596
GRAVY (calculated)
0.318
Length
621 amino acids
Sequence
(BLAST)
001: RAYVLHPSIV CATNPPATMA PLPDTTAEGD GKAMGDAWDY RGRPAVRDSS GGWSSAAMIL GVELNERLTT LGIAVNLVTY LTATMHLGNA ASANAVTNFL
101: GTSFLLCLLG GFVADTYLGR YLTIAISTAV QAAGMTVLTV STAAPGLRPA PCKDPSGDGS APGCAPPSGT QLGVLYLGLY LTALGTGGLK SSVSGFGSDQ
201: FDESHAGERR RMARFFGWFF FFISLGSLLA VTVLVYVQDN VGRRWGYGAC VVAILAGLGV FLAGTPRYRF KKLAGSPLTQ IAAVTAAAWR KRALPLPSDP
301: AMLYDVDDAA AAGEDVGGKR KLPHSKQCRF LDQAAIVEVE VELEPSSPSS GKKKKKKKWA VCTVTEVEEV KQVVRMLPTW ATTIVFWTVY AQMTTFSVSQ
401: AQALDRRLGR SFVIPAGSLT VFFVGSILLT VPIYDRLIAP LARRLTGNPQ GLSPLQRIFV GLFLSILAMA VAGLTERRRL TASTAGVQLS VFLIVPQFLL
501: VGAGEAFTYI GQLDFFLREC PKDMKTMSTG LFLTTLSLGF FLSSGLVSVV HAVTSSDGRR PWLANDIDKG RLDYFYWLLA AISAANLGIF VAAAKGYVYK
601: EKRLADAGII QLHVQEVVVH A
Best Arabidopsis Sequence Match ( AT1G12110.1 )
(BLAST)
001: MSLPETKSDD ILLDAWDFQG RPADRSKTGG WASAAMILCI EAVERLTTLG IGVNLVTYLT GTMHLGNATA ANTVTNFLGT SFMLCLLGGF IADTFLGRYL
101: TIAIFAAIQA TGVSILTLST IIPGLRPPRC NPTTSSHCEQ ASGIQLTVLY LALYLTALGT GGVKASVSGF GSDQFDETEP KERSKMTYFF NRFFFCINVG
201: SLLAVTVLVY VQDDVGRKWG YGICAFAIVL ALSVFLAGTN RYRFKKLIGS PMTQVAAVIV AAWRNRKLEL PADPSYLYDV DDIIAAEGSM KGKQKLPHTE
301: QFRSLDKAAI RDQEAGVTSN VFNKWTLSTL TDVEEVKQIV RMLPIWATCI LFWTVHAQLT TLSVAQSETL DRSIGSFEIP PASMAVFYVG GLLLTTAVYD
401: RVAIRLCKKL FNYPHGLRPL QRIGLGLFFG SMAMAVAALV ELKRLRTAHA HGPTVKTLPL GFYLLIPQYL IVGIGEALIY TGQLDFFLRE CPKGMKGMST
501: GLLLSTLALG FFFSSVLVTI VEKFTGKAHP WIADDLNKGR LYNFYWLVAV LVALNFLIFL VFSKWYVYKE KRLAEVGIEL DDEPSIPMGH
Arabidopsis Description
NPF6.3NRT1.1 [Source:UniProtKB/TrEMBL;Acc:A0A178W8F7]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.