Subcellular Localization
min:
: max
Winner_takes_all: peroxisome
Predictor Summary:
Predictor Summary:
- peroxisome 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS2A01G251800.1 | |
| TraesCS2B01G271700.1 | |
| TraesCS2D01G252600.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G12110.1 | TraesCS2A01G251800.1 | AT1G30270.1 | 19766570 |
| AT1G12110.1 | TraesCS2B01G271700.1 | AT1G30270.1 | 19766570 |
| AT1G12110.1 | TraesCS2D01G252600.1 | AT1G30270.1 | 19766570 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G537100.1 | Wheat | peroxisome | 97.19 | 96.72 |
| TraesCS4B01G371000.1 | Wheat | peroxisome | 95.71 | 96.19 |
| TraesCS4B01G375800.1 | Wheat | plasma membrane | 95.87 | 95.72 |
| HORVU4Hr1G088020.4 | Barley | nucleus, plasma membrane | 94.22 | 91.95 |
| OQU93471 | Sorghum | plasma membrane | 77.39 | 77.52 |
| Zm00001d027285_P001 | Maize | cytosol, plasma membrane, vacuole | 76.4 | 77.17 |
| Os03t0103000-01 | Rice | cytosol, peroxisome, plasma membrane | 71.78 | 73.85 |
| TraesCS1D01G214200.1 | Wheat | plasma membrane | 69.97 | 71.14 |
| TraesCS1D01G214300.1 | Wheat | plasma membrane | 69.8 | 71.09 |
| GSMUA_Achr8P11190_001 | Banana | peroxisome | 65.51 | 70.27 |
| GSMUA_Achr8P11180_001 | Banana | peroxisome | 65.68 | 69.95 |
| GSMUA_Achr11P... | Banana | plasma membrane | 64.69 | 69.14 |
| TraesCS7D01G297000.1 | Wheat | plasma membrane | 66.01 | 66.33 |
| PGSC0003DMT400012226 | Potato | cytosol, peroxisome, plasma membrane | 63.7 | 65.42 |
| Solyc08g078950.2.1 | Tomato | cytosol, peroxisome, plasma membrane | 63.53 | 65.25 |
| GSMUA_Achr11P... | Banana | peroxisome | 60.4 | 65.01 |
| CDY30051 | Canola | cytosol, peroxisome, plasma membrane | 36.8 | 63.9 |
| PGSC0003DMT400032493 | Potato | cytosol, peroxisome, plasma membrane | 62.05 | 63.73 |
| Solyc08g007430.1.1 | Tomato | cytosol, peroxisome, plasma membrane | 61.72 | 63.39 |
| KRH04097 | Soybean | peroxisome | 61.72 | 62.96 |
| CDY69100 | Canola | plasma membrane | 34.32 | 62.65 |
| Bra019744.1-P | Field mustard | plasma membrane | 27.56 | 62.31 |
| VIT_02s0154g00260.t01 | Wine grape | plastid | 65.35 | 61.49 |
| KRH28055 | Soybean | plasma membrane | 59.08 | 61.09 |
| AT1G12110.1 | Thale cress | plasma membrane | 58.91 | 60.51 |
| Solyc06g060620.2.1 | Tomato | plasma membrane | 59.08 | 60.47 |
| KRH77380 | Soybean | cytosol, plasma membrane, plastid | 58.42 | 60.41 |
| CDY15967 | Canola | plasma membrane | 57.1 | 60.28 |
| KRH57369 | Soybean | plasma membrane | 58.42 | 60.0 |
| Bra026991.1-P | Field mustard | plasma membrane | 58.25 | 59.93 |
| CDY26539 | Canola | plasma membrane | 56.6 | 59.76 |
| Bra016789.1-P | Field mustard | plasma membrane | 58.09 | 59.66 |
| CDY31242 | Canola | plasma membrane | 56.44 | 59.48 |
| CDY21035 | Canola | plasma membrane | 56.44 | 59.48 |
| PGSC0003DMT400035882 | Potato | plasma membrane | 57.92 | 59.29 |
| TraesCS1D01G032700.1 | Wheat | peroxisome | 51.16 | 53.26 |
| TraesCS2D01G327000.1 | Wheat | plasma membrane | 47.52 | 50.97 |
| TraesCS5D01G419200.2 | Wheat | plasma membrane | 48.84 | 49.75 |
| TraesCS2D01G307400.1 | Wheat | plasma membrane | 34.16 | 35.57 |
| TraesCS4D01G087900.1 | Wheat | golgi, peroxisome, plasma membrane | 34.98 | 35.04 |
| TraesCS7D01G357300.2 | Wheat | plasma membrane | 35.48 | 34.79 |
| TraesCS3D01G081100.1 | Wheat | cytosol, peroxisome, plasma membrane, plastid | 35.97 | 33.33 |
| TraesCS2D01G348600.1 | Wheat | plasma membrane | 30.2 | 32.74 |
| TraesCS2D01G348500.1 | Wheat | plasma membrane | 29.37 | 31.84 |
| TraesCS5D01G067100.1 | Wheat | plasma membrane | 29.37 | 31.73 |
| TraesCS5D01G067400.1 | Wheat | plasma membrane | 29.21 | 31.55 |
| TraesCS5D01G398000.1 | Wheat | plasma membrane | 29.87 | 31.15 |
| TraesCS2D01G259400.2 | Wheat | plasma membrane | 29.04 | 30.4 |
| TraesCS2D01G348400.1 | Wheat | plasma membrane | 22.77 | 25.09 |
Protein Annotations
| EnsemblPlants:TraesCS4D01G361500.1 | EnsemblPlantsGene:TraesCS4D01G361500 | Gene3D:1.20.1250.20 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 |
| GO:GO:0006810 | GO:GO:0006857 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0022857 | GO:GO:0055085 |
| InterPro:MFS_trans_sf | InterPro:POT_fam | InterPro:PTR2_symporter_CS | PANTHER:PTHR11654 | PANTHER:PTHR11654:SF142 | PFAM:PF00854 |
| ScanProsite:PS01022 | SEG:seg | SUPFAM:SSF103473 | TMHMM:TMhelix | MapMan:24.2.2.9 | : |
Description
No Description!
Coordinates
chr4D:-:508264328..508271957
Molecular Weight (calculated)
64769.8 Da
IEP (calculated)
9.196
GRAVY (calculated)
0.338
Length
606 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPLPETTAE AAAEDGGGDS KALGDAWDYR GRPALRSSSG GWSSAAMILG VELNERLTTL GIAVNLVTYL TATMHLGNAA SANAVTNFLG TSFLLCLLGG
101: FVADTYLGRY LTIAISTAVQ AAGMTILTVS TAAPGLRPAP CKDPTGDGRV PGCAPPTGTQ LAVLYLGLYL TALGTGGLKS SVSGFGSDQF DESHAGERRR
201: MARFFGWFFF FISLGSLLAV TVLVYVQDNV GRRWGYGACV VAILAGLGVF LAGTPRYRFK KLAGSPLTQI AAVTAAAWRK RALPLPSDPS MLYDLDDAAA
301: AGEDVGGKRK LPHSKQCRFL DQAAIVEVEL EPPSSSSGKK KKKWAVCTVT EVEEVKQVVR MLPTWATTII FWTVYAQMTT FSVSQAQALD RRLGPSFVIP
401: AGSLTVFFVG SILLTVPIYD RLIAPLARRL TGNPQGLSPL QRIFVGLFLS ILAMVVAGLT ERHRLSASTA GVQLSVFLIV PQFLLVGAGE AFTYIGQLDF
501: FLRECPRDMK TMSTGLFLTT LSLGFFLSSG LVSVVHAVTT SGGRRPWLAN DIDKGRLDYF YWLLAAISTA NLGIFVAAAK GYVYKEKRLA DAGFIELHVE
601: EVVIHA
101: FVADTYLGRY LTIAISTAVQ AAGMTILTVS TAAPGLRPAP CKDPTGDGRV PGCAPPTGTQ LAVLYLGLYL TALGTGGLKS SVSGFGSDQF DESHAGERRR
201: MARFFGWFFF FISLGSLLAV TVLVYVQDNV GRRWGYGACV VAILAGLGVF LAGTPRYRFK KLAGSPLTQI AAVTAAAWRK RALPLPSDPS MLYDLDDAAA
301: AGEDVGGKRK LPHSKQCRFL DQAAIVEVEL EPPSSSSGKK KKKWAVCTVT EVEEVKQVVR MLPTWATTII FWTVYAQMTT FSVSQAQALD RRLGPSFVIP
401: AGSLTVFFVG SILLTVPIYD RLIAPLARRL TGNPQGLSPL QRIFVGLFLS ILAMVVAGLT ERHRLSASTA GVQLSVFLIV PQFLLVGAGE AFTYIGQLDF
501: FLRECPRDMK TMSTGLFLTT LSLGFFLSSG LVSVVHAVTT SGGRRPWLAN DIDKGRLDYF YWLLAAISTA NLGIFVAAAK GYVYKEKRLA DAGFIELHVE
601: EVVIHA
001: MSLPETKSDD ILLDAWDFQG RPADRSKTGG WASAAMILCI EAVERLTTLG IGVNLVTYLT GTMHLGNATA ANTVTNFLGT SFMLCLLGGF IADTFLGRYL
101: TIAIFAAIQA TGVSILTLST IIPGLRPPRC NPTTSSHCEQ ASGIQLTVLY LALYLTALGT GGVKASVSGF GSDQFDETEP KERSKMTYFF NRFFFCINVG
201: SLLAVTVLVY VQDDVGRKWG YGICAFAIVL ALSVFLAGTN RYRFKKLIGS PMTQVAAVIV AAWRNRKLEL PADPSYLYDV DDIIAAEGSM KGKQKLPHTE
301: QFRSLDKAAI RDQEAGVTSN VFNKWTLSTL TDVEEVKQIV RMLPIWATCI LFWTVHAQLT TLSVAQSETL DRSIGSFEIP PASMAVFYVG GLLLTTAVYD
401: RVAIRLCKKL FNYPHGLRPL QRIGLGLFFG SMAMAVAALV ELKRLRTAHA HGPTVKTLPL GFYLLIPQYL IVGIGEALIY TGQLDFFLRE CPKGMKGMST
501: GLLLSTLALG FFFSSVLVTI VEKFTGKAHP WIADDLNKGR LYNFYWLVAV LVALNFLIFL VFSKWYVYKE KRLAEVGIEL DDEPSIPMGH
101: TIAIFAAIQA TGVSILTLST IIPGLRPPRC NPTTSSHCEQ ASGIQLTVLY LALYLTALGT GGVKASVSGF GSDQFDETEP KERSKMTYFF NRFFFCINVG
201: SLLAVTVLVY VQDDVGRKWG YGICAFAIVL ALSVFLAGTN RYRFKKLIGS PMTQVAAVIV AAWRNRKLEL PADPSYLYDV DDIIAAEGSM KGKQKLPHTE
301: QFRSLDKAAI RDQEAGVTSN VFNKWTLSTL TDVEEVKQIV RMLPIWATCI LFWTVHAQLT TLSVAQSETL DRSIGSFEIP PASMAVFYVG GLLLTTAVYD
401: RVAIRLCKKL FNYPHGLRPL QRIGLGLFFG SMAMAVAALV ELKRLRTAHA HGPTVKTLPL GFYLLIPQYL IVGIGEALIY TGQLDFFLRE CPKGMKGMST
501: GLLLSTLALG FFFSSVLVTI VEKFTGKAHP WIADDLNKGR LYNFYWLVAV LVALNFLIFL VFSKWYVYKE KRLAEVGIEL DDEPSIPMGH
Arabidopsis Description
NPF6.3NRT1.1 [Source:UniProtKB/TrEMBL;Acc:A0A178W8F7]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.