Factsheet for Zm00001d027285_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, vacuole, cytosol

Predictor Summary:

cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane, vacuole
Any Predictor:	cytosol, secretory
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d018799_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12110.1	Zm00001d018799_P001	AT1G30270.1	19766570

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU93471	Sorghum	plasma membrane	90.33	89.59
TraesCS4B01G375800.1	Wheat	plasma membrane	77.5	76.61
TraesCS5A01G537100.1	Wheat	peroxisome	77.67	76.52
TraesCS4D01G361500.1	Wheat	peroxisome	77.17	76.4
TraesCS4B01G371000.1	Wheat	peroxisome	76.5	76.12
HORVU4Hr1G088020.4	Barley	nucleus, plasma membrane	77.33	74.72
Os03t0103000-01	Rice	cytosol, peroxisome, plasma membrane	70.33	71.65
Zm00001d029932_P001	Maize	plasma membrane	70.5	71.09
GSMUA_Achr8P11190_001	Banana	peroxisome	66.0	70.09
Zm00001d029933_P001	Maize	cytosol, peroxisome, plasma membrane	67.83	69.22
GSMUA_Achr8P11180_001	Banana	peroxisome	64.67	68.19
GSMUA_Achr11P...	Banana	plasma membrane	63.17	66.84
Zm00001d024587_P001	Maize	plasma membrane	66.83	65.95
GSMUA_Achr11P...	Banana	peroxisome	60.5	64.48
PGSC0003DMT400012226	Potato	cytosol, peroxisome, plasma membrane	63.33	64.41
Solyc08g078950.2.1	Tomato	cytosol, peroxisome, plasma membrane	62.5	63.56
CDY30051	Canola	cytosol, peroxisome, plasma membrane	36.33	62.46
Bra019744.1-P	Field mustard	plasma membrane	27.67	61.94
PGSC0003DMT400032493	Potato	cytosol, peroxisome, plasma membrane	60.67	61.69
Solyc08g007430.1.1	Tomato	cytosol, peroxisome, plasma membrane	60.5	61.53
KRH04097	Soybean	peroxisome	60.83	61.45
CDY69100	Canola	plasma membrane	33.83	61.14
KRH28055	Soybean	plasma membrane	58.83	60.24
KRH77380	Soybean	cytosol, plasma membrane, plastid	58.33	59.73
VIT_02s0154g00260.t01	Wine grape	plastid	63.5	59.16
KRH57369	Soybean	plasma membrane	57.67	58.64
CDY15967	Canola	plasma membrane	55.83	58.36
AT1G12110.1	Thale cress	plasma membrane	57.33	58.31
Solyc06g060620.2.1	Tomato	plasma membrane	57.5	58.28
Bra026991.1-P	Field mustard	plasma membrane	57.17	58.23
Bra016789.1-P	Field mustard	plasma membrane	57.0	57.97
CDY21035	Canola	plasma membrane	55.33	57.74
CDY26539	Canola	plasma membrane	55.17	57.67
CDY31242	Canola	plasma membrane	55.17	57.57
PGSC0003DMT400035882	Potato	plasma membrane	56.67	57.43
Zm00001d044529_P001	Maize	cytosol, peroxisome, plasma membrane	49.17	49.92
Zm00001d009399_P001	Maize	cytosol, peroxisome, plasma membrane	48.33	49.07
Zm00001d016982_P001	Maize	plasma membrane	48.0	48.32
Zm00001d036942_P001	Maize	plasma membrane	33.5	37.22
Zm00001d046383_P001	Maize	plasma membrane	35.5	35.98
Zm00001d036941_P001	Maize	plasma membrane	35.5	34.98
Zm00001d003603_P001	Maize	plasma membrane	34.17	34.75
Zm00001d003208_P001	Maize	plasma membrane	26.17	34.2
Zm00001d043463_P001	Maize	plasma membrane	31.17	34.19
Zm00001d041163_P001	Maize	plasma membrane	32.67	34.03
Zm00001d007255_P001	Maize	plasma membrane	34.5	33.23
Zm00001d040201_P001	Maize	plasma membrane	35.5	32.22
Zm00001d004621_P001	Maize	plasma membrane	25.17	31.07
Zm00001d049349_P001	Maize	mitochondrion	33.83	28.31
Zm00001d025748_P001	Maize	plasma membrane	24.0	26.23

Protein Annotations

Gene3D:1.20.1250.20	EntrezGene:103630501	MapMan:24.2.2.9	UniProt:A0A1D6JK18	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0006810	GO:GO:0006857	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021
GO:GO:0022857	GO:GO:0055085	InterPro:MFS_trans_sf	ProteinID:ONL92599.1	PFAM:PF00854	InterPro:POT_fam
ScanProsite:PS01022	PANTHER:PTHR11654	PANTHER:PTHR11654:SF142	InterPro:PTR2_symporter_CS	SUPFAM:SSF103473	TMHMM:TMhelix
UniParc:UPI0002215416	EnsemblPlantsGene:Zm00001d027285	EnsemblPlants:Zm00001d027285_P001	EnsemblPlants:Zm00001d027285_T001	SEG:seg	:

Description

Protein NRT1/ PTR FAMILY 6.3

Coordinates

chr1:+:1816514..1818676

Molecular Weight (calculated)

64118.9 Da

IEP (calculated)

8.362

GRAVY (calculated)

0.367

Length

600 amino acids

Sequence
(BLAST)

001: MSDVAALPET VAEGKMTTTM NDAWDYKGRP AVRASSGGWS SAAMILVVEL NERLTTLGVG VNLVTYLIGT MHLGGAASAN AVTNFLGASF MLCLLGGFVA
101: DTYLGRYLTI AIFTAVQAAG MCVLTVSTAA PGLRPPACAD PTGPSRRSSC VEPSGTQLGV LYLGLYLTAL GTGGLKSSVS GFGSDQFDES DDGERRSMAR
201: FFGWFFFFIS IGSLLAVTVL VYVQDHLGRR WGYGACVAAI LAGLLLFVTG TSRYRFKKLV GSPLTQIAAV TAAAWRKRAL PLPPDPDMLY DVQDAVAAGE
301: DVKGKQKMPR TKQCRFLERA AIVEEAEGSA AGETNKWAAC TLTDVEEVKQ VVRMLPTWAT TIPFWTVYAQ MTTFSVSQAQ AMDRRLGSGA FEVPAGSLTV
401: FLVGSILLTV PVYDRLVVPL ARRFTANPQG LSPLQRISVG LLLSVLAMVA AALTERARRS ASLAGATPSV FLLVPQFFLV GVGEAFAYVG QLDFFLRECP
501: RGMKTMSTGL FLSTLSLGFF FSTAIVSAVH AVTTSGGRRP WLTDDLDQGS LHKFYWLLAA ISAVDLLAFV AVARGYVYKE KRLAAEAGIV HDDDVLVHAT

Best Arabidopsis Sequence Match ( AT1G12110.1 )
(BLAST)

001: MSLPETKSDD ILLDAWDFQG RPADRSKTGG WASAAMILCI EAVERLTTLG IGVNLVTYLT GTMHLGNATA ANTVTNFLGT SFMLCLLGGF IADTFLGRYL
101: TIAIFAAIQA TGVSILTLST IIPGLRPPRC NPTTSSHCEQ ASGIQLTVLY LALYLTALGT GGVKASVSGF GSDQFDETEP KERSKMTYFF NRFFFCINVG
201: SLLAVTVLVY VQDDVGRKWG YGICAFAIVL ALSVFLAGTN RYRFKKLIGS PMTQVAAVIV AAWRNRKLEL PADPSYLYDV DDIIAAEGSM KGKQKLPHTE
301: QFRSLDKAAI RDQEAGVTSN VFNKWTLSTL TDVEEVKQIV RMLPIWATCI LFWTVHAQLT TLSVAQSETL DRSIGSFEIP PASMAVFYVG GLLLTTAVYD
401: RVAIRLCKKL FNYPHGLRPL QRIGLGLFFG SMAMAVAALV ELKRLRTAHA HGPTVKTLPL GFYLLIPQYL IVGIGEALIY TGQLDFFLRE CPKGMKGMST
501: GLLLSTLALG FFFSSVLVTI VEKFTGKAHP WIADDLNKGR LYNFYWLVAV LVALNFLIFL VFSKWYVYKE KRLAEVGIEL DDEPSIPMGH

Arabidopsis Description

NPF6.3NRT1.1 [Source:UniProtKB/TrEMBL;Acc:A0A178W8F7]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.