Factsheet for VIT_02s0154g00260.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
plasma membrane 4
vacuole 2
extracellular 1
endoplasmic reticulum 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	plastid
iPSORT:	plastid
MultiLoc:	mitochondrion
Plant-mPloc:	plasma membrane, vacuole
Predotar:	plastid
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_10s0003g04020.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12110.1	VIT_10s0003g04020.t01	AT1G30270.1	19766570

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400012226	Potato	cytosol, peroxisome, plasma membrane	72.2	78.81
Solyc08g078950.2.1	Tomato	cytosol, peroxisome, plasma membrane	72.05	78.64
PGSC0003DMT400032493	Potato	cytosol, peroxisome, plasma membrane	69.57	75.93
Solyc08g007430.1.1	Tomato	cytosol, peroxisome, plasma membrane	68.94	75.25
KRH04097	Soybean	peroxisome	68.01	73.74
GSMUA_Achr11P...	Banana	plasma membrane	64.13	72.84
GSMUA_Achr8P11180_001	Banana	peroxisome	63.35	71.7
GSMUA_Achr8P11190_001	Banana	peroxisome	62.89	71.68
Os08t0155400-01	Rice	plasma membrane	58.23	71.43
PGSC0003DMT400035882	Potato	plasma membrane	64.91	70.61
Solyc06g060620.2.1	Tomato	plasma membrane	64.91	70.61
EES13374	Sorghum	plasma membrane	65.84	70.55
CDY30051	Canola	cytosol, peroxisome, plasma membrane	38.04	70.2
KRH57369	Soybean	plasma membrane	64.13	70.0
GSMUA_Achr1P20240_001	Banana	plasma membrane	64.44	69.98
TraesCS7D01G297000.1	Wheat	plasma membrane	65.37	69.82
TraesCS7B01G201900.1	Wheat	plasma membrane	65.06	69.49
TraesCS7A01G301700.1	Wheat	plasma membrane	64.91	69.32
Zm00001d024587_P001	Maize	plasma membrane	64.75	68.59
HORVU7Hr1G071600.2	Barley	mitochondrion	65.84	68.28
GSMUA_AchrUn_...	Banana	cytosol, peroxisome, plasma membrane	61.65	67.98
Bra016789.1-P	Field mustard	plasma membrane	61.65	67.29
CDY21035	Canola	plasma membrane	59.94	67.13
CDY31242	Canola	plasma membrane	59.94	67.13
CDY15967	Canola	plasma membrane	59.78	67.07
Bra026991.1-P	Field mustard	plasma membrane	61.34	67.06
Bra019744.1-P	Field mustard	plasma membrane	27.8	66.79
CDY26539	Canola	plasma membrane	59.47	66.72
CDY69100	Canola	plasma membrane	34.32	66.57
AT1G12110.1	Thale cress	plasma membrane	60.71	66.27
GSMUA_Achr11P...	Banana	peroxisome	57.92	66.25
EER91957	Sorghum	plasma membrane	60.56	65.55
TraesCS4D01G361500.1	Wheat	peroxisome	61.49	65.35
Zm00001d029932_P001	Maize	plasma membrane	60.25	65.21
Os10t0554200-02	Rice	plasma membrane	60.09	64.93
TraesCS5A01G537100.1	Wheat	peroxisome	61.18	64.7
Os03t0103000-01	Rice	cytosol, peroxisome, plasma membrane	59.16	64.69
TraesCS1B01G224900.1	Wheat	plasma membrane	59.78	64.6
TraesCS1D01G214200.1	Wheat	plasma membrane	59.78	64.6
TraesCS4B01G375800.1	Wheat	plasma membrane	60.87	64.58
TraesCS4B01G371000.1	Wheat	peroxisome	60.4	64.51
Zm00001d029933_P001	Maize	cytosol, peroxisome, plasma membrane	58.85	64.46
TraesCS1A01G211000.1	Wheat	cytosol	59.47	64.37
TraesCS1B01G225000.1	Wheat	plasma membrane	59.32	64.2
TraesCS1D01G214300.1	Wheat	plasma membrane	59.32	64.2
OQU93471	Sorghum	plasma membrane	60.09	63.97
HORVU4Hr1G088020.4	Barley	nucleus, plasma membrane	61.49	63.77
Zm00001d027285_P001	Maize	cytosol, plasma membrane, vacuole	59.16	63.5
TraesCS1A01G210900.1	Wheat	plasma membrane	47.36	63.15
GSMUA_Achr6P36750_001	Banana	plasma membrane	64.75	63.09
HORVU1Hr1G053990.4	Barley	peroxisome	60.25	62.88
VIT_11s0016g05170.t01	Wine grape	plasma membrane	51.24	57.29
HORVU1Hr1G054020.3	Barley	mitochondrion, peroxisome, plastid	42.55	50.18
VIT_11s0016g05180.t01	Wine grape	plasma membrane	44.88	49.4
VIT_12s0059g01240.t01	Wine grape	plastid	45.34	44.99
VIT_02s0087g00580.t01	Wine grape	plasma membrane	20.34	44.26
VIT_01s0026g01570.t01	Wine grape	plasma membrane	34.94	38.46
VIT_17s0000g05640.t01	Wine grape	cytosol, plasma membrane, plastid	35.56	37.54
VIT_12s0035g01820.t01	Wine grape	golgi, peroxisome, plasma membrane	34.94	36.89
VIT_18s0001g11280.t01	Wine grape	plastid	33.7	34.12
VIT_14s0060g00220.t01	Wine grape	plasma membrane	31.37	32.69
VIT_01s0150g00250.t01	Wine grape	cytosol, peroxisome, plasma membrane	32.45	32.66
VIT_18s0089g01010.t01	Wine grape	plasma membrane	35.09	24.97

Protein Annotations

Gene3D:1.20.1250.20	EntrezGene:100259122	wikigene:100259122	MapMan:24.2.2.9	EMBL:AM428912	ProteinID:CAN71417
ProteinID:CAN71417.1	ProteinID:CCB56506	ProteinID:CCB56506.1	UniProt:F6HPA0	EMBL:FN596001	GO:GO:0003674
GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0006857	GO:GO:0008150	GO:GO:0016020
GO:GO:0016021	GO:GO:0022857	GO:GO:0055085	EntrezGene:LOC100259122	wikigene:LOC100259122	InterPro:MFS_trans_sf
PFAM:PF00854	InterPro:POT_fam	ScanProsite:PS01022	PANTHER:PTHR11654	PANTHER:PTHR11654:SF78	InterPro:PTR2_symporter_CS
SUPFAM:SSF103473	TMHMM:TMhelix	UniParc:UPI0002108290	ArrayExpress:VIT_02s0154g00260	EnsemblPlantsGene:VIT_02s0154g00260	EnsemblPlants:VIT_02s0154g00260.t01
unigene:Vvi.22664	RefSeq:XP_002266951	RefSeq:XP_002266951.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr2:-:5106165..5110187

Molecular Weight (calculated)

70562.8 Da

IEP (calculated)

9.568

GRAVY (calculated)

0.346

Length

644 amino acids

Sequence
(BLAST)

001: MMSLGCPSLA IKRPQASAID VPQLSLSSLS SSVALLKCYL PISITKPLQP IQTMSLPQTQ GDTILDAWDY KGRPAERSRT GGWMSAAMIL GVEACERLTT
101: LGIAVNLVTY LTGTMHLGNA SSANTVTNFL GTSFMLCLLG GFVADTFLGR YLTIAIFATV QATGVTILTI STTIPSLRPP KCAMETGPLC TPASGMQLVV
201: LYLALYLTAL GTGGLKSSVS GFGSDQFDDS NKEERNQMTN FFNWFFFFIS IGSLAAVTIL VYIQDNLGRK WGYGICACAI AIGLVVFLSG TRKYRFKKLV
301: GSPLTQIATV FVAAWKKRNL ELPTDSSFLF DIDYAAAEGQ KKKKQRLPHS KQFRFLDRAA IKDPQMGNGI NAVVNKWQLS TLTDVEEVKL VLRMLPTWAT
401: TILFWTVYAQ MTTFSVSQAT TMDRHIGKSF QIPPASLTVF FVGAILLTVP VYDRILVPIA ARILKNPQGL TPLQRIGVGL VLSILAMVAA ALTELKRLHV
501: ARSHGLTDDP TAVVPLGVFW LVPQFLLVGA GEAFTYIGQL DFFLRECPKG MKTMSTGLFL STLSLGFFLS SLLVSIVHKL TGDRKPWLAD NLNQGKLYNF
601: YWLLAILSVF NLGFYLIGAK WYVYKDKRLA DEGIELEDVG PTCH

Best Arabidopsis Sequence Match ( AT1G12110.1 )
(BLAST)

001: MSLPETKSDD ILLDAWDFQG RPADRSKTGG WASAAMILCI EAVERLTTLG IGVNLVTYLT GTMHLGNATA ANTVTNFLGT SFMLCLLGGF IADTFLGRYL
101: TIAIFAAIQA TGVSILTLST IIPGLRPPRC NPTTSSHCEQ ASGIQLTVLY LALYLTALGT GGVKASVSGF GSDQFDETEP KERSKMTYFF NRFFFCINVG
201: SLLAVTVLVY VQDDVGRKWG YGICAFAIVL ALSVFLAGTN RYRFKKLIGS PMTQVAAVIV AAWRNRKLEL PADPSYLYDV DDIIAAEGSM KGKQKLPHTE
301: QFRSLDKAAI RDQEAGVTSN VFNKWTLSTL TDVEEVKQIV RMLPIWATCI LFWTVHAQLT TLSVAQSETL DRSIGSFEIP PASMAVFYVG GLLLTTAVYD
401: RVAIRLCKKL FNYPHGLRPL QRIGLGLFFG SMAMAVAALV ELKRLRTAHA HGPTVKTLPL GFYLLIPQYL IVGIGEALIY TGQLDFFLRE CPKGMKGMST
501: GLLLSTLALG FFFSSVLVTI VEKFTGKAHP WIADDLNKGR LYNFYWLVAV LVALNFLIFL VFSKWYVYKE KRLAEVGIEL DDEPSIPMGH

Arabidopsis Description

NPF6.3NRT1.1 [Source:UniProtKB/TrEMBL;Acc:A0A178W8F7]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.