Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, peroxisome, plastid
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 2
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU2Hr1G060350.5 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G12110.1 | HORVU2Hr1G060350.5 | AT1G30270.1 | 19766570 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G211000.1 | Wheat | cytosol | 76.92 | 70.59 |
| TraesCS1B01G225000.1 | Wheat | plasma membrane | 76.74 | 70.42 |
| TraesCS1D01G214300.1 | Wheat | plasma membrane | 76.37 | 70.08 |
| HORVU1Hr1G053990.4 | Barley | peroxisome | 71.98 | 63.7 |
| Zm00001d029933_P001 | Maize | cytosol, peroxisome, plasma membrane | 67.95 | 63.1 |
| EER91957 | Sorghum | plasma membrane | 68.68 | 63.03 |
| Zm00001d029932_P001 | Maize | plasma membrane | 68.5 | 62.86 |
| Os10t0554200-02 | Rice | plasma membrane | 68.31 | 62.58 |
| HORVU4Hr1G088020.4 | Barley | nucleus, plasma membrane | 57.33 | 50.4 |
| GSMUA_Achr8P11190_001 | Banana | peroxisome | 49.45 | 47.79 |
| KRH28055 | Soybean | plasma membrane | 50.73 | 47.27 |
| KRH77380 | Soybean | cytosol, plasma membrane, plastid | 50.55 | 47.1 |
| PGSC0003DMT400012226 | Potato | cytosol, peroxisome, plasma membrane | 50.73 | 46.95 |
| GSMUA_Achr8P11180_001 | Banana | peroxisome | 48.72 | 46.75 |
| Solyc08g078950.2.1 | Tomato | cytosol, peroxisome, plasma membrane | 50.37 | 46.61 |
| GSMUA_Achr11P... | Banana | plasma membrane | 48.35 | 46.56 |
| GSMUA_Achr11P... | Banana | peroxisome | 46.34 | 44.94 |
| HORVU7Hr1G071600.2 | Barley | mitochondrion | 51.1 | 44.93 |
| PGSC0003DMT400032493 | Potato | cytosol, peroxisome, plasma membrane | 48.35 | 44.75 |
| KRH04097 | Soybean | peroxisome | 48.35 | 44.44 |
| Solyc08g007430.1.1 | Tomato | cytosol, peroxisome, plasma membrane | 47.8 | 44.24 |
| KRH57369 | Soybean | plasma membrane | 47.25 | 43.73 |
| VIT_02s0154g00260.t01 | Wine grape | plastid | 50.18 | 42.55 |
| AT1G12110.1 | Thale cress | plasma membrane | 45.97 | 42.54 |
| Bra026991.1-P | Field mustard | plasma membrane | 45.79 | 42.44 |
| CDY15967 | Canola | plasma membrane | 44.51 | 42.33 |
| CDY26539 | Canola | plasma membrane | 44.14 | 41.99 |
| Bra016789.1-P | Field mustard | plasma membrane | 45.24 | 41.86 |
| Solyc06g060620.2.1 | Tomato | plasma membrane | 45.24 | 41.72 |
| CDY21035 | Canola | plasma membrane | 43.59 | 41.39 |
| PGSC0003DMT400035882 | Potato | plasma membrane | 44.69 | 41.22 |
| CDY31242 | Canola | plasma membrane | 43.22 | 41.04 |
| HORVU2Hr1G081050.1 | Barley | endoplasmic reticulum, extracellular | 4.76 | 37.68 |
| HORVU1Hr1G004720.4 | Barley | plasma membrane | 38.46 | 36.4 |
| HORVU5Hr1G099170.6 | Barley | plasma membrane | 39.38 | 35.25 |
| CDY30051 | Canola | cytosol, peroxisome, plasma membrane | 21.79 | 34.1 |
| HORVU2Hr1G098210.2 | Barley | mitochondrion, plasma membrane | 17.22 | 30.62 |
| CDY69100 | Canola | plasma membrane | 18.5 | 30.42 |
| Bra019744.1-P | Field mustard | plasma membrane | 13.74 | 27.99 |
| HORVU3Hr1G071510.1 | Barley | golgi, plasma membrane | 29.12 | 27.85 |
| HORVU2Hr1G007730.1 | Barley | mitochondrion | 16.85 | 26.14 |
| HORVU7Hr1G086170.5 | Barley | cytosol, peroxisome, plastid | 29.3 | 25.36 |
| HORVU5Hr1G095020.1 | Barley | plasma membrane | 27.11 | 25.34 |
| HORVU4Hr1G015640.2 | Barley | golgi, peroxisome, plasma membrane | 27.66 | 25.04 |
| HORVU2Hr1G085210.21 | Barley | plasma membrane | 23.99 | 23.35 |
| HORVU3Hr1G014510.3 | Barley | plastid | 27.66 | 23.16 |
| HORVU2Hr1G062730.7 | Barley | plasma membrane | 24.36 | 23.01 |
| HORVU2Hr1G065480.1 | Barley | golgi, plasma membrane | 7.69 | 18.67 |
| HORVU2Hr1G085260.3 | Barley | plasma membrane | 13.19 | 14.04 |
| HORVU2Hr1G076880.23 | Barley | golgi, peroxisome | 14.47 | 13.46 |
Protein Annotations
| EnsemblPlants:HORVU1Hr1G054020.3 | EnsemblPlantsGene:HORVU1Hr1G054020 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0006810 |
| GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0022857 | GO:GO:0055085 | InterPro:MFS_trans_sf |
| InterPro:POT_fam | PANTHER:PTHR11654 | PANTHER:PTHR11654:SF136 | PFAM:PF00854 | SEG:seg | SUPFAM:SSF103473 |
| TMHMM:TMhelix | UniParc:UPI000B475620 | UniProt:A0A287FMV9 | MapMan:24.2.2.9 | : | : |
Description
No Description!
Coordinates
chrchr1H:+:398749583..398752980
Molecular Weight (calculated)
50439.6 Da
IEP (calculated)
9.138
GRAVY (calculated)
0.219
Length
546 amino acids
Sequence
(BLAST)
(BLAST)
001: MRPPDPRYFF TRAPPSFCSC TGASRNAGSX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
101: XXXXXXXXXX XXXXXLKSSV SGFGSDQFDE SDGGERKMMM RFFNWFYFFV SIGALLAVTV LVYVQDNIGR RWGYGVVAVG ILCGLGVFLS GTRKYRFKKL
201: VGSPLTQVAA VTAAAWTKRS LPLPSDPSML YDVDDKAAAG EDLKGKMKLP HSKECRASRS QHIFLDHAAV IDRESSPAAA SSWTLCTRTD VEEVKQVVRM
301: LPIWATTIMF WTIHAQMTTF AVEQASVMNR AVGGSGFLIP AGSLTVFLIG SILLTVPIYD RLVAPVARRV TGNPHGLSPL QRVFVGLFLS IAGMAAAALV
401: ERHRLTESAN GVTLTVFLLM PQFLLVGAGE AFTYMGQLDF FLRECPKGMK TMSTGLFLST CALGFFFSTL IVTIVHKVTG HGPRDGWLAN NIDEGRLDYF
501: YWLLAVMSAI NIVFFTMAAR GYVYKEKRLA DAGIELADEE AMIVGH
101: XXXXXXXXXX XXXXXLKSSV SGFGSDQFDE SDGGERKMMM RFFNWFYFFV SIGALLAVTV LVYVQDNIGR RWGYGVVAVG ILCGLGVFLS GTRKYRFKKL
201: VGSPLTQVAA VTAAAWTKRS LPLPSDPSML YDVDDKAAAG EDLKGKMKLP HSKECRASRS QHIFLDHAAV IDRESSPAAA SSWTLCTRTD VEEVKQVVRM
301: LPIWATTIMF WTIHAQMTTF AVEQASVMNR AVGGSGFLIP AGSLTVFLIG SILLTVPIYD RLVAPVARRV TGNPHGLSPL QRVFVGLFLS IAGMAAAALV
401: ERHRLTESAN GVTLTVFLLM PQFLLVGAGE AFTYMGQLDF FLRECPKGMK TMSTGLFLST CALGFFFSTL IVTIVHKVTG HGPRDGWLAN NIDEGRLDYF
501: YWLLAVMSAI NIVFFTMAAR GYVYKEKRLA DAGIELADEE AMIVGH
001: MSLPETKSDD ILLDAWDFQG RPADRSKTGG WASAAMILCI EAVERLTTLG IGVNLVTYLT GTMHLGNATA ANTVTNFLGT SFMLCLLGGF IADTFLGRYL
101: TIAIFAAIQA TGVSILTLST IIPGLRPPRC NPTTSSHCEQ ASGIQLTVLY LALYLTALGT GGVKASVSGF GSDQFDETEP KERSKMTYFF NRFFFCINVG
201: SLLAVTVLVY VQDDVGRKWG YGICAFAIVL ALSVFLAGTN RYRFKKLIGS PMTQVAAVIV AAWRNRKLEL PADPSYLYDV DDIIAAEGSM KGKQKLPHTE
301: QFRSLDKAAI RDQEAGVTSN VFNKWTLSTL TDVEEVKQIV RMLPIWATCI LFWTVHAQLT TLSVAQSETL DRSIGSFEIP PASMAVFYVG GLLLTTAVYD
401: RVAIRLCKKL FNYPHGLRPL QRIGLGLFFG SMAMAVAALV ELKRLRTAHA HGPTVKTLPL GFYLLIPQYL IVGIGEALIY TGQLDFFLRE CPKGMKGMST
501: GLLLSTLALG FFFSSVLVTI VEKFTGKAHP WIADDLNKGR LYNFYWLVAV LVALNFLIFL VFSKWYVYKE KRLAEVGIEL DDEPSIPMGH
101: TIAIFAAIQA TGVSILTLST IIPGLRPPRC NPTTSSHCEQ ASGIQLTVLY LALYLTALGT GGVKASVSGF GSDQFDETEP KERSKMTYFF NRFFFCINVG
201: SLLAVTVLVY VQDDVGRKWG YGICAFAIVL ALSVFLAGTN RYRFKKLIGS PMTQVAAVIV AAWRNRKLEL PADPSYLYDV DDIIAAEGSM KGKQKLPHTE
301: QFRSLDKAAI RDQEAGVTSN VFNKWTLSTL TDVEEVKQIV RMLPIWATCI LFWTVHAQLT TLSVAQSETL DRSIGSFEIP PASMAVFYVG GLLLTTAVYD
401: RVAIRLCKKL FNYPHGLRPL QRIGLGLFFG SMAMAVAALV ELKRLRTAHA HGPTVKTLPL GFYLLIPQYL IVGIGEALIY TGQLDFFLRE CPKGMKGMST
501: GLLLSTLALG FFFSSVLVTI VEKFTGKAHP WIADDLNKGR LYNFYWLVAV LVALNFLIFL VFSKWYVYKE KRLAEVGIEL DDEPSIPMGH
Arabidopsis Description
NPF6.3NRT1.1 [Source:UniProtKB/TrEMBL;Acc:A0A178W8F7]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.