Factsheet for GSMUA_AchrUn_randomP24200_001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
plastid 1
peroxisome 1
vacuole 2
extracellular 1
endoplasmic reticulum 1
plasma membrane 2
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plasma membrane
Any Predictor:	cytosol, nucleus, peroxisome, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plastid
MultiLoc:	peroxisome
Plant-mPloc:	vacuole
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr4P23000_001
GSMUA_Achr4P31540_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12110.1	GSMUA_Achr4P23000_001	AT1G30270.1	19766570
AT1G12110.1	GSMUA_Achr4P31540_001	AT1G30270.1	19766570

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P20240_001	Banana	plasma membrane	77.57	76.39
GSMUA_Achr8P11190_001	Banana	peroxisome	71.58	73.98
GSMUA_Achr8P11180_001	Banana	peroxisome	71.92	73.81
GSMUA_Achr11P...	Banana	plasma membrane	70.55	72.66
EES13374	Sorghum	plasma membrane	73.63	71.55
Os08t0155400-01	Rice	plasma membrane	63.87	71.05
TraesCS7D01G297000.1	Wheat	plasma membrane	73.12	70.81
Zm00001d024587_P001	Maize	plasma membrane	73.63	70.72
TraesCS7B01G201900.1	Wheat	plasma membrane	72.95	70.65
GSMUA_Achr6P36750_001	Banana	plasma membrane	79.79	70.5
TraesCS7A01G301700.1	Wheat	plasma membrane	72.77	70.48
HORVU7Hr1G071600.2	Barley	mitochondrion	73.29	68.92
GSMUA_Achr11P...	Banana	peroxisome	65.24	67.67
CDY30051	Canola	cytosol, peroxisome, plasma membrane	39.9	66.76
PGSC0003DMT400012226	Potato	cytosol, peroxisome, plasma membrane	65.75	65.08
Solyc08g078950.2.1	Tomato	cytosol, peroxisome, plasma membrane	65.58	64.92
CDY69100	Canola	plasma membrane	36.64	64.46
Bra019744.1-P	Field mustard	plasma membrane	29.45	64.18
KRH04097	Soybean	peroxisome	65.07	63.97
PGSC0003DMT400032493	Potato	cytosol, peroxisome, plasma membrane	64.21	63.56
Solyc08g007430.1.1	Tomato	cytosol, peroxisome, plasma membrane	63.7	63.05
KRH28055	Soybean	plasma membrane	62.84	62.63
KRH77380	Soybean	cytosol, plasma membrane, plastid	62.33	62.12
VIT_02s0154g00260.t01	Wine grape	plastid	67.98	61.65
CDY31242	Canola	plasma membrane	60.27	61.22
CDY21035	Canola	plasma membrane	60.27	61.22
Solyc06g060620.2.1	Tomato	plasma membrane	61.64	60.81
Bra016789.1-P	Field mustard	plasma membrane	61.3	60.68
PGSC0003DMT400035882	Potato	plasma membrane	60.96	60.14
CDY15967	Canola	plasma membrane	59.08	60.1
KRH57369	Soybean	plasma membrane	60.45	59.83
CDY26539	Canola	plasma membrane	58.39	59.41
Bra026991.1-P	Field mustard	plasma membrane	59.59	59.08
AT1G12110.1	Thale cress	plasma membrane	59.42	58.81
GSMUA_Achr6P05170_001	Banana	plasma membrane	56.16	56.65
GSMUA_Achr3P05990_001	Banana	cytosol, plasma membrane, plastid	49.14	50.0
GSMUA_Achr7P08300_001	Banana	plasma membrane	55.48	48.14
GSMUA_Achr9P14440_001	Banana	plasma membrane	16.44	47.29
GSMUA_Achr4P30700_001	Banana	plasma membrane	54.45	46.29
GSMUA_Achr7P08880_001	Banana	plasma membrane	33.56	35.44
GSMUA_Achr8P08410_001	Banana	plasma membrane	35.27	34.97
GSMUA_Achr10P...	Banana	plasma membrane	33.73	34.93
GSMUA_Achr5P16920_001	Banana	plasma membrane	32.71	34.29
GSMUA_Achr2P16840_001	Banana	plasma membrane, plastid	35.27	34.16
GSMUA_Achr6P07370_001	Banana	plasma membrane	32.19	33.57
GSMUA_Achr9P01100_001	Banana	cytosol, peroxisome, plasma membrane	33.22	32.6
GSMUA_Achr6P00820_001	Banana	plasma membrane	35.27	32.59
GSMUA_Achr6P29080_001	Banana	plasma membrane	32.71	32.37
GSMUA_Achr9P08330_001	Banana	plasma membrane	31.85	31.85
GSMUA_AchrUn_...	Banana	plasma membrane	9.76	30.81
GSMUA_Achr8P29280_001	Banana	plasma membrane	31.51	28.89
GSMUA_Achr11P...	Banana	plasma membrane	28.6	25.26

Protein Annotations

MapMan:24.2.2.9	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0006857
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0022857	GO:GO:0055085	EnsemblPlantsGene:GSMUA_AchrUn_randomG24200_001
EnsemblPlants:GSMUA_AchrUn_randomP24200_001	EnsemblPlants:GSMUA_AchrUn_randomT24200_001	UniProt:M0UBX8	InterPro:MFS_trans_sf	PFAM:PF00854	InterPro:POT_fam
ScanProsite:PS01022	PANTHER:PTHR11654	PANTHER:PTHR11654:SF78	InterPro:PTR2_symporter_CS	SUPFAM:SSF103473	TMHMM:TMhelix
UniParc:UPI0002956549	SEG:seg	:	:	:	:

Description

Nitrate transporter 1.1 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG24200_001]

Coordinates

chrchrUn_random:+:120226603..120229559

Molecular Weight (calculated)

63056.7 Da

IEP (calculated)

8.614

GRAVY (calculated)

0.350

Length

584 amino acids

Sequence
(BLAST)

001: MKTNTVGLPE TSAASGEVLS DAWDYKGRLA VRSRTGGWTG AAMILGMLVE LNERLATLGI AVNLVTYLTG TMHQGNADAA NVVTNFMGVS FMLCLLGGFV
101: ADAYLGRYLT VGIFTAVQAS GVTILTISTA LPGLHPPPCA DTASGSCAEA SGLQMGVLYL ALYLTALGTG GLKSSVSGLG SDQFDETNSG EKAQMLKFFS
201: WFFFFISLGS LLAVTVLVYI QDHLGRRWGY GLCASSIVVG LVVFLAGTRR YRFKKLAGSP LTQIATVVVA AWRKRGLELP SDPSLLHDID AKQAAAAENG
301: SRKSKAKQRL AHTKQFRFLD RAAINVNTIA DKHSKWELCT ITDVEEVKTV IRMLPIWATT IMFWTVYAQM TTFSVSQANT MDRHVGRSFE IPSGSLTVFF
401: VGSILITRIG IGLGLSALAM ASAALTEIKR LRVARSDPAA LEMGATVPLS VFWLIPQFFL VGAGEAFTYV GQLDFFLREC PKGMKTMSTG LFLSTLSLGF
501: FVSTALVAAV DSITGQSGHG AWLADNLNHG KLNNFYWLLA ALCLVNLMVY LVAAKWYVYK DQRPAVDDDS VARVELTEET FHHA

Best Arabidopsis Sequence Match ( AT1G12110.1 )
(BLAST)

001: MSLPETKSDD ILLDAWDFQG RPADRSKTGG WASAAMILCI EAVERLTTLG IGVNLVTYLT GTMHLGNATA ANTVTNFLGT SFMLCLLGGF IADTFLGRYL
101: TIAIFAAIQA TGVSILTLST IIPGLRPPRC NPTTSSHCEQ ASGIQLTVLY LALYLTALGT GGVKASVSGF GSDQFDETEP KERSKMTYFF NRFFFCINVG
201: SLLAVTVLVY VQDDVGRKWG YGICAFAIVL ALSVFLAGTN RYRFKKLIGS PMTQVAAVIV AAWRNRKLEL PADPSYLYDV DDIIAAEGSM KGKQKLPHTE
301: QFRSLDKAAI RDQEAGVTSN VFNKWTLSTL TDVEEVKQIV RMLPIWATCI LFWTVHAQLT TLSVAQSETL DRSIGSFEIP PASMAVFYVG GLLLTTAVYD
401: RVAIRLCKKL FNYPHGLRPL QRIGLGLFFG SMAMAVAALV ELKRLRTAHA HGPTVKTLPL GFYLLIPQYL IVGIGEALIY TGQLDFFLRE CPKGMKGMST
501: GLLLSTLALG FFFSSVLVTI VEKFTGKAHP WIADDLNKGR LYNFYWLVAV LVALNFLIFL VFSKWYVYKE KRLAEVGIEL DDEPSIPMGH

Arabidopsis Description

NPF6.3NRT1.1 [Source:UniProtKB/TrEMBL;Acc:A0A178W8F7]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.