Factsheet for VIT_17s0000g05640.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, cytosol

Predictor Summary:

plastid 3
cytosol 1
vacuole 2
extracellular 1
endoplasmic reticulum 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane, plastid
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	vacuole
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH03418	Soybean	plasma membrane	70.98	74.4
KRH56961	Soybean	plasma membrane	70.66	73.93
VIT_01s0026g01570.t01	Wine grape	plasma membrane	69.67	72.65
PGSC0003DMT400065182	Potato	plasma membrane	67.7	70.12
GSMUA_Achr7P08880_001	Banana	plasma membrane	63.11	69.62
Bra010117.1-P	Field mustard	plasma membrane	60.49	66.49
CDX84348	Canola	plasma membrane	60.98	65.96
CDY00323	Canola	plasma membrane	60.98	65.96
Os06t0581000-01	Rice	plasma membrane	63.61	65.76
TraesCS7A01G365100.1	Wheat	plasma membrane	62.95	65.42
Zm00001d046383_P001	Maize	plasma membrane	63.11	65.03
EER89980	Sorghum	plasma membrane	63.93	64.78
AT5G62730.1	Thale cress	plasma membrane	61.64	63.84
GSMUA_Achr2P16840_001	Banana	plasma membrane, plastid	62.62	63.35
TraesCS7D01G357300.2	Wheat	plasma membrane	63.28	62.46
Zm00001d036942_P001	Maize	plasma membrane	54.75	61.85
Solyc03g113250.2.1	Tomato	plasma membrane	61.64	61.64
GSMUA_Achr6P00820_001	Banana	plasma membrane	63.61	61.39
HORVU7Hr1G086170.5	Barley	cytosol, peroxisome, plastid	62.95	60.86
Zm00001d036941_P001	Maize	plasma membrane	60.49	60.59
TraesCS7B01G262200.1	Wheat	plasma membrane, plastid	63.44	56.09
VIT_18s0001g11280.t01	Wine grape	plastid	40.98	39.31
VIT_12s0035g01820.t01	Wine grape	golgi, peroxisome, plasma membrane	38.2	38.2
VIT_14s0060g00220.t01	Wine grape	plasma membrane	37.05	36.57
VIT_11s0016g05170.t01	Wine grape	plasma membrane	33.93	35.94
VIT_02s0154g00260.t01	Wine grape	plastid	37.54	35.56
VIT_02s0087g00580.t01	Wine grape	plasma membrane	16.23	33.45
VIT_12s0059g01240.t01	Wine grape	plastid	35.25	33.13
VIT_11s0016g05180.t01	Wine grape	plasma membrane	31.64	32.99
VIT_01s0150g00250.t01	Wine grape	cytosol, peroxisome, plasma membrane	31.97	30.47
VIT_18s0089g01010.t01	Wine grape	plasma membrane	38.2	25.75

Protein Annotations

EntrezGene:100255336	wikigene:100255336	MapMan:11.1.4.1	MapMan:24.2.2.9	ProteinID:CBI15276	ProteinID:CBI15276.3
UniProt:D7SIG5	EMBL:FN594950	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0022857	GO:GO:0055085	EntrezGene:LOC100255336
wikigene:LOC100255336	InterPro:MFS_trans_sf	PFAM:PF00854	InterPro:POT_fam	PANTHER:PTHR11654	PANTHER:PTHR11654:SF184
SUPFAM:SSF103473	TMHMM:TMhelix	UniParc:UPI0001BE0B86	ArrayExpress:VIT_17s0000g05640	EnsemblPlantsGene:VIT_17s0000g05640	EnsemblPlants:VIT_17s0000g05640.t01
unigene:Vvi.13994	RefSeq:XP_002271787	RefSeq:XP_002271787.1	RefSeq:XP_002271787.2	SEG:seg	:

Description

No Description!

Coordinates

chr17:+:6144991..6147996

Molecular Weight (calculated)

66847.8 Da

IEP (calculated)

8.785

GRAVY (calculated)

0.368

Length

610 amino acids

Sequence
(BLAST)

001: MTLSITSLSN SNNILAIKSS ITRDPTQAGK EMDGEQQLST WEGYVDWRNR PAVKGRHGGM LAAFFVLVVE VLENLAYLAN ASNLVLYLSK FMHFSPSSSA
101: NIVTNFMGTA FLLALLGGFL SDAFFSTYLI YLISAAIELV GLLILAIQAH VPSLKPPACD LGNISNPCRE ADGGKAGMLF AGLYLVALGV GGIKGSLPPH
201: GAEQFDDNTP KGRKQRSTFF NYYVFSLSCG ALIAVTFVVW IEDNKGWQWG FGISTASILI SIPIFLLGSA TYRTKIPTGS PITTIVKVLV AAICNAYKLR
301: NCSNSVMSMA TSPSYTTEIG GKEESCSKEM VPRQAPTESL KFLNNAVIDK PFHSALECTV KQVEEVKIVL RILPIFACTI MLNCCLAQLS TFSVQQAATM
401: NTKLGTLKVP PASLPIFPVL FIMILAPTYN HIIIPFTRRT TKTEMGITHL QRIGTGLILS IVAMVVAAFV EIKRKRVAAE SGLVHSSEPL PITFFWVALQ
501: YLFLGSADLF TLAGLMEFFF TEAPTSMRSL ATALSWASLA MGYYLSSVLV SIVNSVTNSY SHHAWLFGNN LNHYHLEKFY WLMCGLSGLN FLHYLLWASR
601: YKYRTASPDN

Best Arabidopsis Sequence Match ( AT1G69850.1 )
(BLAST)

001: MEVEEEVSRW EGYADWRNRA AVKGRHGGML AASFVLVVEI LENLAYLANA SNLVLYLREY MHMSPSKSAN DVTNFMGTAF LLALLGGFLS DAFFSTFQIF
101: LISASIEFLG LIILTIQART PSLMPPSCDS PTCEEVSGSK AAMLFVGLYL VALGVGGIKG SLASHGAEQF DESTPKGRKQ RSTFFNYFVF CLACGALVAV
201: TFVVWLEDNK GWEWGFGVST IAIFVSILIF LSGSRFYRNK IPCGSPLTTI LKVLLAASVK CCSSGSSSNA VASMSVSPSN HCVSKGKKEV ESQGELEKPR
301: QEEALPPRAQ LTNSLKVLNG AADEKPVHRL LECTVQQVED VKIVLKMLPI FACTIMLNCC LAQLSTFSVQ QAASMNTKIG SLKIPPASLP IFPVVFIMIL
401: APIYDHLIIP FARKATKTET GVTHLQRIGV GLVLSILAMA VAALVEIKRK GVAKDSGLLD SKETLPVTFL WIALQYLFLG SADLFTLAGL LEYFFTEAPS
501: SMRSLATSLS WASLAMGYYL SSVIVSIVNS ITGSSGNTPW LRGKSINRYK LDYFYWLMCV LSAANFLHYL FWAMRYKYRS TGSRS

Arabidopsis Description

NPF4.6Protein NRT1/ PTR FAMILY 4.6 [Source:UniProtKB/Swiss-Prot;Acc:Q8H157]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.