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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • plasma membrane 4
  • vacuole 2
  • extracellular 1
  • endoplasmic reticulum 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:nucleus, secretory
BaCelLo:nucleus
MultiLoc:plasma membrane
Plant-mPloc:vacuole
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400065182 Potato plasma membrane 86.56 89.64
KRH03418 Soybean plasma membrane 59.02 61.86
VIT_17s0000g05640.t01 Wine grape cytosol, plasma membrane, plastid 61.64 61.64
KRH56961 Soybean plasma membrane 58.69 61.41
GSMUA_Achr7P08880_001 Banana plasma membrane 54.92 60.58
Solyc05g007000.2.1 Tomato plasma membrane 55.57 59.68
Solyc05g006990.2.1 Tomato endoplasmic reticulum, peroxisome, plasma membrane 56.72 59.04
Solyc04g005790.2.1 Tomato plasma membrane 56.07 58.86
Bra010117.1-P Field mustard plasma membrane 53.28 58.56
CDX84348 Canola plasma membrane 53.28 57.62
CDY00323 Canola plasma membrane 53.11 57.45
EER89980 Sorghum plasma membrane 55.74 56.48
Zm00001d046383_P001 Maize plasma membrane 54.59 56.25
TraesCS7A01G365100.1 Wheat plasma membrane 53.93 56.05
Os06t0581000-01 Rice plasma membrane 53.77 55.59
AT5G62730.1 Thale cress plasma membrane 52.95 54.84
TraesCS7D01G357300.2 Wheat plasma membrane 54.75 54.05
GSMUA_Achr2P16840_001 Banana plasma membrane, plastid 53.28 53.9
Zm00001d036942_P001 Maize plasma membrane 46.56 52.59
GSMUA_Achr6P00820_001 Banana plasma membrane 54.43 52.53
Zm00001d036941_P001 Maize plasma membrane 52.13 52.22
HORVU7Hr1G086170.5 Barley cytosol, peroxisome, plastid 53.44 51.66
TraesCS7B01G262200.1 Wheat plasma membrane, plastid 53.61 47.39
Solyc04g079520.2.1 Tomato plasma membrane 35.25 36.94
Solyc04g079510.1.1 Tomato plasma membrane 34.43 36.78
Solyc04g079530.2.1 Tomato plasma membrane 33.93 35.75
Solyc11g042820.1.1 Tomato peroxisome, plasma membrane, vacuole 32.3 33.22
Solyc01g103030.2.1 Tomato cytosol, peroxisome, plasma membrane 32.95 33.17
Solyc08g078950.2.1 Tomato cytosol, peroxisome, plasma membrane 31.97 33.05
Solyc10g039290.1.1 Tomato plasma membrane 30.98 33.04
Solyc03g005950.1.1 Tomato plasma membrane 33.77 32.85
Solyc07g032490.2.1 Tomato plasma membrane 30.33 32.51
Solyc08g061020.1.1 Tomato plasma membrane 15.57 31.67
Solyc12g006050.1.1 Tomato cytosol, peroxisome, plasma membrane 30.66 31.59
Solyc06g060620.2.1 Tomato plasma membrane 30.49 31.42
Solyc01g102360.1.1 Tomato plasma membrane 31.31 31.36
Solyc01g096880.2.1 Tomato plasma membrane 29.51 31.36
Solyc08g007430.1.1 Tomato cytosol, peroxisome, plasma membrane 30.0 31.02
Solyc07g049290.2.1 Tomato nucleus 29.34 30.29
Solyc08g061010.2.1 Tomato plasma membrane 11.48 26.32
Protein Annotations
EnsemblPlants:Solyc03g113250.2.1EnsemblPlantsGene:Solyc03g113250.2Gene3D:1.20.1250.20GO:GO:0003674GO:GO:0005215GO:GO:0005575
GO:GO:0006810GO:GO:0008150GO:GO:0016020GO:GO:0016021GO:GO:0022857GO:GO:0055085
InterPro:MFS_trans_sfInterPro:POT_famPANTHER:PTHR11654PANTHER:PTHR11654:SF184PFAM:PF00854SEG:seg
SUPFAM:SSF103473TMHMM:TMhelixUniParc:UPI0002767A41UniProt:K4BKH8MapMan:24.2.2.9:
Description
Protein NRT1/ PTR FAMILY 4.7 [Source:Projected from Arabidopsis thaliana (AT5G62730) UniProtKB/Swiss-Prot;Acc:Q9FM20]
Coordinates
chr3:-:63445220..63450520
Molecular Weight (calculated)
68137.5 Da
IEP (calculated)
7.932
GRAVY (calculated)
0.158
Length
610 amino acids
Sequence
(BLAST)
001: MDHEQGFTMW EGYVDWRNRA AIKECHGGAV AASFVLVVEI LENLAYLANA SNLVLYLSKF MNFSPSASAN IVTNFMGTSF FLALLGGLSS DFFSTYYIYI
101: ISATIEFMAY DNKMLLQLSW RNNGKLSIYQ IVYQHHSSFI RLHQVKLSSD QGFYSEPSTG LLMLTLQACI PSLRQPICAS VNRNAPCKEV GGGHIAMLFS
201: GLYLVALGVG GIKGSLPSHG AEQFDENTPQ GRKHRSSFFN YYIFCLACGA LIAVTLVVWI EDNKGWQWGF GISTVAILSS IVIFLLGSRT YRIKVPTGSP
301: MTTIFKVLVA AFSNSLFPKN SIGNVLDTRE TPQYTTEISA EEGHGDLNTE IQTEMKDLKS IAKATVENAT YPSLQCTVKQ VQDVKIVVQV VPIFMSTVML
401: NCCLAQLSTF SVQQASEMGI THLQRIGTGL FLSVVAMAVA ALVEMKRKRV AEQSGLMNST EPLPITFLWV ALQYLFLGSA DLFSLAGLME FFFTEAPLSM
501: RSLTTALSWA SLAMGYYLSS VIVSIVNHIT GRFQQTPWLY GSNLNHYHLE RFYWLMCILS GLNFFHYLLW ATRYKYRSTK PDDERDQLDN TPSSDVQMLK
601: TKRNKRQGSE
Best Arabidopsis Sequence Match ( AT1G69850.1 )
(BLAST)
001: MEVEEEVSRW EGYADWRNRA AVKGRHGGML AASFVLVVEI LENLAYLANA SNLVLYLREY MHMSPSKSAN DVTNFMGTAF LLALLGGFLS DAFFSTFQIF
101: LISASIEFLG LIILTIQART PSLMPPSCDS PTCEEVSGSK AAMLFVGLYL VALGVGGIKG SLASHGAEQF DESTPKGRKQ RSTFFNYFVF CLACGALVAV
201: TFVVWLEDNK GWEWGFGVST IAIFVSILIF LSGSRFYRNK IPCGSPLTTI LKVLLAASVK CCSSGSSSNA VASMSVSPSN HCVSKGKKEV ESQGELEKPR
301: QEEALPPRAQ LTNSLKVLNG AADEKPVHRL LECTVQQVED VKIVLKMLPI FACTIMLNCC LAQLSTFSVQ QAASMNTKIG SLKIPPASLP IFPVVFIMIL
401: APIYDHLIIP FARKATKTET GVTHLQRIGV GLVLSILAMA VAALVEIKRK GVAKDSGLLD SKETLPVTFL WIALQYLFLG SADLFTLAGL LEYFFTEAPS
501: SMRSLATSLS WASLAMGYYL SSVIVSIVNS ITGSSGNTPW LRGKSINRYK LDYFYWLMCV LSAANFLHYL FWAMRYKYRS TGSRS
Arabidopsis Description
NPF4.6Protein NRT1/ PTR FAMILY 4.6 [Source:UniProtKB/Swiss-Prot;Acc:Q8H157]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.