Factsheet for Solyc03g005950.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 1
plasma membrane 4
vacuole 2
extracellular 1
endoplasmic reticulum 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, secretory
BaCelLo:	cytosol
MultiLoc:	plasma membrane
Plant-mPloc:	vacuole
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400071504	Potato	plasma membrane	76.4	80.23
KRH21158	Soybean	plasma membrane	59.65	62.86
KRH42929	Soybean	plasma membrane	60.45	62.85
KRH11088	Soybean	plasma membrane	58.85	61.6
KRH59041	Soybean	plasma membrane	57.89	61.11
HORVU3Hr1G071510.1	Barley	golgi, plasma membrane	51.99	57.09
Zm00001d043463_P001	Maize	plasma membrane	49.12	56.31
TraesCS3A01G272600.1	Wheat	plasma membrane	47.05	55.35
OQU87541	Sorghum	cytosol, peroxisome, plasma membrane	50.56	51.71
HORVU2Hr1G098210.2	Barley	mitochondrion, plasma membrane	24.56	50.16
Solyc04g079510.1.1	Tomato	plasma membrane	41.79	45.88
Solyc04g079530.2.1	Tomato	plasma membrane	40.35	43.7
Solyc04g079520.2.1	Tomato	plasma membrane	40.51	43.64
Solyc10g039290.1.1	Tomato	plasma membrane	37.96	41.61
Solyc01g103030.2.1	Tomato	cytosol, peroxisome, plasma membrane	40.19	41.58
Solyc11g042820.1.1	Tomato	peroxisome, plasma membrane, vacuole	38.76	40.98
Solyc04g005790.2.1	Tomato	plasma membrane	37.48	40.45
Solyc01g102360.1.1	Tomato	plasma membrane	38.92	40.07
Solyc07g032490.2.1	Tomato	plasma membrane	35.89	39.54
Solyc05g006990.2.1	Tomato	endoplasmic reticulum, peroxisome, plasma membrane	36.68	39.25
Solyc05g007000.2.1	Tomato	plasma membrane	35.41	39.08
Solyc08g061010.2.1	Tomato	plasma membrane	16.11	37.97
Solyc08g078950.2.1	Tomato	cytosol, peroxisome, plasma membrane	34.77	36.95
Solyc08g007430.1.1	Tomato	cytosol, peroxisome, plasma membrane	33.49	35.59
Solyc01g096880.2.1	Tomato	plasma membrane	32.38	35.37
Solyc06g060620.2.1	Tomato	plasma membrane	33.33	35.3
Solyc07g049290.2.1	Tomato	nucleus	32.54	34.52
Solyc12g006050.1.1	Tomato	cytosol, peroxisome, plasma membrane	32.38	34.29
Solyc08g061020.1.1	Tomato	plasma membrane	16.27	34.0
Solyc03g113250.2.1	Tomato	plasma membrane	32.85	33.77

Protein Annotations

MapMan:24.2.2.9	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	GO:GO:0022857	GO:GO:0055085	InterPro:IPR020846	UniProt:K4BE18
InterPro:MFS_dom	InterPro:MFS_trans_sf	PFAM:PF00854	InterPro:POT_fam	PANTHER:PTHR11654	PANTHER:PTHR11654:SF131
SUPFAM:SSF103473	EnsemblPlantsGene:Solyc03g005950.1	EnsemblPlants:Solyc03g005950.1.1	TMHMM:TMhelix	UniParc:UPI0002767617	SEG:seg

Description

No Description!

Coordinates

chr3:-:636645..641392

Molecular Weight (calculated)

69792.3 Da

IEP (calculated)

7.763

GRAVY (calculated)

0.330

Length

627 amino acids

Sequence
(BLAST)

001: MRGGGIDIGT LDNGDGCEGK DDHVLRGWDK SELLEGKVDW RGRIATKDKH GGQGPSLLIL GTFACENIAS FVLGVTLVTY FNGVMHYDVA DAATQVTNYS
101: GTSYILTVLV AILADTYIGR FTAVFVSCWI EFLGLALLAF QAHYPKYKPP LCNILDPTSN CEKVDGKNAA LLFVALYLVA LGSAGIKSAL PSHGADQFDE
201: KDKKEAIQMS SFFNWLLLAV CLGGSFSTTF IVWIQQHKGW DWGFFVSTLA MLCGAIIFCV GLPWYRIFVI KGTSAITEIF QVYVAAIRNR NLQLPQDSSD
301: LYEIDEDEEV AIPTEFLPHT DTYKFLDKAA IIQTSQQQSK KAINPWRLCR VTQVENAKIL LSMVPVFCCT IIMTLCLAQL QTFSIQQGFT MDTRITNSFH
401: IPPASLPIIP IVFLIIIIPV YDQIIVPILR KFTGIPTGIT YLQRVGVGLV LSALSMTAAS ILEVKRKQVA QEHNMLDAIP VLQPLPISVF WLSIQFFIFG
501: IADMFTYVGL LEFFYSQAPK ELKSVSSCFL WTSMSIGYFL SSIIVKIVNK ATKKVTNSGG WLVGNNFNRN HLNLFYLMLA VLSCLNFCVY LVVASKYKYR
601: VQKSPSEKDD SRVHALKDRN SLSTFSM

Best Arabidopsis Sequence Match ( AT1G59740.1 )
(BLAST)

001: MAEINKQSNK WEQEEVSNEN NWELAEEESV DWRGRPSNPN KHGGMRAALF VLGLQAFEIM GIAAVGNNLI TYVINEMHFP LSKAANIVTN FVGTIFIFAL
101: LGGYLSDAFL GSFWTIIIFG FVELSGFILL SVQAHLPQLK PPKCNPLIDQ TCEEAKGFKA MIFFMALYLV ALGSGCVKPN MIAHGADQFS QSHPKQSKRL
201: SSYFNAAYFA FSMGELIALT LLVWVQTHSG MDIGFGVSAA AMTMGIISLV SGTMYFRNKR PRRSIFTPIA HVIVAAILKR KLASPSDPRM LHGDHHVAND
301: VVPSSTLPHT PRFRFLDKAC IKIQDTNTKE SPWRLCTVTQ VEQVKTLISL VPIFASTIVF NTILAQLQTF SVQQGSSMNT RLSNSFHIPP ASLQAIPYIM
401: LIFLVPLYDS FLVPFARKLT GHNSGIPPLT RIGIGLFLST FSMVSAAMLE KKRRDSSVLD GRILSIFWIT PQFLIFGISE MFTAVGLIEF FYKQSAKGME
501: SFLMALTYCS YSFGFYFSSV LVSVVNKITS TSVDSKGWLG ENDLNKDRLD LFYWLLAVLS LLNFLSYLFW SRWNIKSSRR NNTNVVGDEN I

Arabidopsis Description

NPF4.3Protein NRT1/ PTR FAMILY 4.3 [Source:UniProtKB/Swiss-Prot;Acc:Q93VV5]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.