Factsheet for Solyc01g096880.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 1
plastid 2
mitochondrion 1
peroxisome 1
vacuole 2
extracellular 1
endoplasmic reticulum 1
plasma membrane 3
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	plastid
iPSORT:	mitochondrion
MultiLoc:	peroxisome
Plant-mPloc:	vacuole
Predotar:	plastid
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400070732	Potato	plasma membrane	97.39	97.22
Solyc07g032490.2.1	Tomato	plasma membrane	77.7	78.38
VIT_11s0016g05170.t01	Wine grape	plasma membrane	76.83	76.56
AT2G26690.1	Thale cress	plasma membrane	75.09	74.7
KRH20280	Soybean	plasma membrane	74.56	73.67
KRH03705	Soybean	plasma membrane	74.22	72.82
Bra012052.1-P	Field mustard	plasma membrane	65.51	72.17
CDY45207	Canola	golgi, plasma membrane	73.69	72.06
CDX71495	Canola	plasma membrane	74.04	70.83
CDY30787	Canola	mitochondrion	73.34	70.05
GSMUA_Achr6P05170_001	Banana	plasma membrane	70.03	69.43
HORVU1Hr1G004720.4	Barley	plasma membrane	64.98	64.64
TraesCS1A01G031300.1	Wheat	peroxisome	65.16	64.26
TraesCS1B01G038700.1	Wheat	peroxisome	64.98	64.09
TraesCS1D01G032700.1	Wheat	peroxisome	64.81	63.92
KXG32694	Sorghum	cytosol	65.16	63.71
Zm00001d044529_P001	Maize	cytosol, peroxisome, plasma membrane	65.51	63.62
Solyc08g061020.1.1	Tomato	plasma membrane	33.1	63.33
GSMUA_Achr7P08300_001	Banana	plasma membrane	73.52	62.7
Solyc08g061010.2.1	Tomato	plasma membrane	28.92	62.41
Zm00001d009399_P001	Maize	cytosol, peroxisome, plasma membrane	63.76	61.93
GSMUA_Achr4P30700_001	Banana	plasma membrane	71.78	59.97
Solyc08g078950.2.1	Tomato	cytosol, peroxisome, plasma membrane	54.53	53.05
Solyc08g007430.1.1	Tomato	cytosol, peroxisome, plasma membrane	54.01	52.54
Solyc06g060620.2.1	Tomato	plasma membrane	52.96	51.35
Solyc07g049290.2.1	Tomato	nucleus	50.17	48.73
Solyc12g006050.1.1	Tomato	cytosol, peroxisome, plasma membrane	50.0	48.48
Solyc05g007000.2.1	Tomato	plasma membrane	37.63	38.03
Solyc04g079510.1.1	Tomato	plasma membrane	37.11	37.3
Solyc05g006990.2.1	Tomato	endoplasmic reticulum, peroxisome, plasma membrane	37.98	37.2
Solyc04g079520.2.1	Tomato	plasma membrane	37.46	36.94
Solyc01g103030.2.1	Tomato	cytosol, peroxisome, plasma membrane	38.15	36.14
Solyc04g079530.2.1	Tomato	plasma membrane	36.06	35.75
Solyc04g005790.2.1	Tomato	plasma membrane	36.06	35.63
Solyc11g042820.1.1	Tomato	peroxisome, plasma membrane, vacuole	36.24	35.08
Solyc10g039290.1.1	Tomato	plasma membrane	32.58	32.69
Solyc03g005950.1.1	Tomato	plasma membrane	35.37	32.38
Solyc01g102360.1.1	Tomato	plasma membrane	32.4	30.54
Solyc03g113250.2.1	Tomato	plasma membrane	31.36	29.51

Protein Annotations

Gene3D:1.20.1250.20	MapMan:24.2.2.9	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810
GO:GO:0006857	GO:GO:0006950	GO:GO:0008150	GO:GO:0009611	GO:GO:0009719	GO:GO:0009753
GO:GO:0016020	GO:GO:0016021	GO:GO:0022857	GO:GO:0055085	UniProt:K4B076	InterPro:MFS_trans_sf
PFAM:PF00854	InterPro:POT_fam	ScanProsite:PS01022	PANTHER:PTHR11654	PANTHER:PTHR11654:SF85	InterPro:PTR2_symporter_CS
SUPFAM:SSF103473	EnsemblPlantsGene:Solyc01g096880.2	EnsemblPlants:Solyc01g096880.2.1	TMHMM:TMhelix	UniParc:UPI0002767C50	SEG:seg

Description

Protein NRT1/ PTR FAMILY 6.2 [Source:Projected from Arabidopsis thaliana (AT2G26690) UniProtKB/Swiss-Prot;Acc:Q9SZY4]

Coordinates

chr1:-:87873761..87877418

Molecular Weight (calculated)

63415.1 Da

IEP (calculated)

9.158

GRAVY (calculated)

0.348

Length

574 amino acids

Sequence
(BLAST)

001: MMSWTVADAV NYKGLPADRT KTGGWVPAAL VLGIEINERL STMGIAVNLV TYLGGTMHLP SAASANIVTD FMGTAFLLSL LGGFLADSFL GRYKTIAIFA
101: LIQALGTGML TVTTGLPQLR PPTCHPHDKY CEPANGFQMG ILYLALYLIA LGTGGLKSSV SGFGTDQFDE KDEKEKSQMA YFFNRFFIFI SIGTLAAVTV
201: LVYVQDEVGR SWAYGICCIS MVIAIIIFFS GTKRYRYKRS SGSPIVQIFQ VILAATRKRK MDVPYDVGML YETNPEGSSR IQHTDQFRCL DKAAIVAQGD
301: FDDHDLNPNP WKLCTVTRVE EVKMMARLIP IWATTILFWT TYAQMITFSV EQAATMERNV GKFKIPAGSL TVFFVSAILI TLIIYDRFIM PLWQKLKGKP
401: GFTSLQKIAI GLVLSTMGMG IAALVEMKRL SVAKSTGRNL STLPISVFYL IPQFFLVGAG EGFIYTGQLD FFITQSPKGM KTMSTGLFLT TLALGFFVSS
501: FLVSIIKKVT GSNGGHDWLA DNINYGRLDC FYGLLAILGV INFVLYIICA TWFKPRKDKY METINNGNVV EDKC

Best Arabidopsis Sequence Match ( AT2G26690.1 )
(BLAST)

001: MESKGSWTVA DAVDYKGRPA DKSKTGGWIT AALILGIEVV ERLSTMGIAV NLVTYLMETM HLPSSTSANI VTDFMGTSFL LCLLGGFLAD SFLGRFKTIG
101: IFSTIQALGT GALAVATKLP ELRPPTCHHG EACIPATAFQ MTILYVSLYL IALGTGGLKS SISGFGSDQF DDKDPKEKAH MAFFFNRFFF FISMGTLLAV
201: TVLVYMQDEV GRSWAYGICT VSMAIAIVIF LCGTKRYRYK KSQGSPVVQI FQVIAAAFRK RKMELPQSIV YLYEDNPEGI RIEHTDQFHL LDKAAIVAEG
301: DFEQTLDGVA IPNPWKLSSV TKVEEVKMMV RLLPIWATTI IFWTTYAQMI TFSVEQASTM RRNIGSFKIP AGSLTVFFVA AILITLAVYD RAIMPFWKKW
401: KGKPGFSSLQ RIAIGLVLST AGMAAAALVE QKRLSVAKSS SQKTLPISVF LLVPQFFLVG AGEAFIYTGQ LDFFITQSPK GMKTMSTGLF LTTLSLGFFV
501: SSFLVSIVKR VTSTSTDVGW LADNINHGRL DYFYWLLVIL SGINFVVYII CALWFKPTKG KDSVEKENGK GFSVEDC

Arabidopsis Description

NPF6.2Protein NRT1/ PTR FAMILY 6.2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZY4]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.