Factsheet for VIT_01s0150g00250.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

plastid 1
vacuole 3
cytosol 1
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plasma membrane
Any Predictor:	cytosol, peroxisome, plastid, secretory
BaCelLo:	plastid
EpiLoc:	vacuole
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane, vacuole
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH01794	Soybean	cytosol, peroxisome, plasma membrane	82.03	83.2
PGSC0003DMT400072037	Potato	cytosol, peroxisome, plasma membrane	82.03	80.4
CDX85654	Canola	cytosol, plasma membrane, plastid	77.19	79.42
Bra023408.1-P	Field mustard	plastid	77.03	79.26
AT5G13400.1	Thale cress	plasma membrane	77.03	79.01
CDX91126	Canola	plastid	76.41	78.62
GSMUA_Achr9P01100_001	Banana	cytosol, peroxisome, plasma membrane	71.56	76.97
EES00465	Sorghum	plastid	71.56	68.67
Zm00001d040201_P001	Maize	plasma membrane	70.62	68.38
TraesCS3D01G081100.1	Wheat	cytosol, peroxisome, plasma membrane, plastid	69.38	67.89
HORVU3Hr1G014510.3	Barley	plastid	69.06	67.79
TraesCS3B01G095900.1	Wheat	cytosol, peroxisome, plasma membrane, plastid	68.75	67.69
TraesCS3A01G081100.3	Wheat	cytosol, peroxisome, plasma membrane, plastid	66.41	67.57
Os01t0103100-01	Rice	plasma membrane	61.41	64.85
EES19057	Sorghum	plastid	25.0	64.0
VIT_11s0016g05170.t01	Wine grape	plasma membrane	32.5	36.11
VIT_11s0016g05180.t01	Wine grape	plasma membrane	32.81	35.9
VIT_02s0154g00260.t01	Wine grape	plastid	32.66	32.45
VIT_14s0060g00220.t01	Wine grape	plasma membrane	31.25	32.36
VIT_12s0059g01240.t01	Wine grape	plastid	32.81	32.36
VIT_01s0026g01570.t01	Wine grape	plasma membrane	29.38	32.14
VIT_17s0000g05640.t01	Wine grape	cytosol, plasma membrane, plastid	30.47	31.97
VIT_12s0035g01820.t01	Wine grape	golgi, peroxisome, plasma membrane	30.31	31.8
VIT_18s0001g11280.t01	Wine grape	plastid	31.41	31.6
VIT_02s0087g00580.t01	Wine grape	plasma membrane	14.22	30.74
VIT_18s0089g01010.t01	Wine grape	plasma membrane	31.72	22.43

Protein Annotations

Gene3D:1.20.1250.20	EntrezGene:100259213	wikigene:100259213	MapMan:24.2.2.9	EMBL:AM431746	EMBL:AM487972
ProteinID:CAN78165	ProteinID:CAN78165.1	ProteinID:CAN84143	ProteinID:CAN84143.1	ProteinID:CCB52272	ProteinID:CCB52272.1
UniProt:F6HJ75	EMBL:FN595770	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810
GO:GO:0006857	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0022857	GO:GO:0055085
InterPro:IPR020846	EntrezGene:LOC100259213	wikigene:LOC100259213	InterPro:MFS_dom	InterPro:MFS_trans_sf	PFAM:PF00854
InterPro:POT_fam	ScanProsite:PS01022	PANTHER:PTHR11654	PANTHER:PTHR11654:SF112	InterPro:PTR2_symporter_CS	SUPFAM:SSF103473
TIGR:TC58636	TIGR:TC67142	TMHMM:TMhelix	UniParc:UPI00015CD1AF	ArrayExpress:VIT_01s0150g00250	EnsemblPlantsGene:VIT_01s0150g00250
EnsemblPlants:VIT_01s0150g00250.t01	unigene:Vvi.432	RefSeq:XP_002272176	RefSeq:XP_002272176.1	RefSeq:XP_010657415.1	RefSeq:XP_010657418.1
RefSeq:XP_010657432.1	RefSeq:XP_010657438.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1:+:22670937..22673886

Molecular Weight (calculated)

70833.2 Da

IEP (calculated)

8.961

GRAVY (calculated)

0.274

Length

640 amino acids

Sequence
(BLAST)

001: MAAREIKSPE VQPETPASLG GNSESFRRKK LGIYFLESDD RRTAFGGGYV GGTTPVNIHG KPIPDLSKTG GWVAAFFIFG NEMAERMAYF GLSVNMVAFM
101: FYVMHRPFSS SANAVNNFLG ISQASSVLGG FLADAYLGRY WTIAIFTTIY LAGLTGITLC ATMNIFVPNQ DQCDQFSLLL GSCEPAKPWQ MFYLYTVLYV
201: TGFGAAGIRP CVSSFGADQF DERSRDYKTH LDRFFNFFYL SVTIGAIVAF TAVVYIQIKR GWGSAFGSLA IAMGISNLVF FIGTPLYRHR LPGGSPLTRV
301: AQVLVAAFRK RNVSFSSGEY VGLYELPGKQ SAIKGSRKIV HTDDFRCLDK AALQLKEDGA APSPWRLCTV TQVEEVKILV KLLPIPACTI ILSLILTEFL
401: TLSVQQAYTL NTHIGRLKLP VTCMPVFPGL SIFLILSLYY SIFVPISRRI TGHPHGASQL QRVGIGLAVS ILSVAWAGVF ERYRRNYAIK QGYEFTFLTP
501: MPHLSAYWLL IQYCLIGIAE VFCIVGLLEF LYEEAPDAMR SIGSAYAAVA GGLGCFGATI LNSIIKSITG DRQQMHPSWL SQNINTGRFD YLYWLLTVFS
601: VINFCIFLYS AQRYKYRVAQ EGTMEEEAVS KKASTPSVES

Best Arabidopsis Sequence Match ( AT5G13400.1 )
(BLAST)

001: MVASEIKSPV SVPETPGSSS VHHRKQLSVF FIESDNRRLA LGRGYTGGTT PVNIHGKPIA NLSKTGGWIA AFFIFGNEMA ERMAYFGLSV NMVAFMFYVM
101: HRPFESSSNA VNNFLGISQA SSVLGGFLAD AYLGRYWTIA IFTTMYLVGL IGITLGASLK MFVPDQSNCG QLSLLLGNCE EAKSWQMLYL YTVLYITGFG
201: AAGIRPCVSS FGADQFDEKS KDYKTHLDRF FNFFYLSVTL GAIIAFTLVV YVQMELGWGM AFGTLAVAMG ISNALFFAGT PLYRHRLPGG SPLTRVAQVL
301: VAAFRKRNAA FTSSEFIGLY EVPGLKSAIN GSRKIPHSND FIWLDKAALE LKEDGLEPSP WKLCTVTQVE EVKILIRLIP IPTCTIMLSL VLTEYLTLSV
401: QQAYTLNTHI QHLKLPVTCM PVFPGLSIFL ILSLYYSVFV PITRRITGNP HGASQLQRVG IGLAVSIISV AWAGLFENYR RHYAIQNGFE FNFLTQMPDL
501: TAYWLLIQYC LIGIAEVFCI VGLLEFLYEE APDAMKSIGS AYAALAGGLG CFAATILNNI VKAATRDSDG KSWLSQNINT GRFDCLYWLL TLLSFLNFCV
601: FLWSAHRYKY RAIESEEDKS SAVL

Arabidopsis Description

NPF6.1Protein NRT1/ PTR FAMILY 6.1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LYR6]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.