Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 2
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 3
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra023408.1-P | Field mustard | plastid | 94.39 | 94.69 |
| CDX85654 | Canola | cytosol, plasma membrane, plastid | 94.23 | 94.53 |
| CDX91126 | Canola | plastid | 93.91 | 94.21 |
| KRH01794 | Soybean | cytosol, peroxisome, plasma membrane | 78.53 | 77.65 |
| VIT_01s0150g00250.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 79.01 | 77.03 |
| PGSC0003DMT400072037 | Potato | cytosol, peroxisome, plasma membrane | 76.76 | 73.35 |
| GSMUA_Achr9P01100_001 | Banana | cytosol, peroxisome, plasma membrane | 68.59 | 71.93 |
| Zm00001d040201_P001 | Maize | plasma membrane | 70.83 | 66.87 |
| EES00465 | Sorghum | plastid | 71.31 | 66.72 |
| HORVU3Hr1G014510.3 | Barley | plastid | 68.11 | 65.18 |
| TraesCS3B01G095900.1 | Wheat | cytosol, peroxisome, plasma membrane, plastid | 67.79 | 65.08 |
| TraesCS3A01G081100.3 | Wheat | cytosol, peroxisome, plasma membrane, plastid | 65.54 | 65.02 |
| TraesCS3D01G081100.1 | Wheat | cytosol, peroxisome, plasma membrane, plastid | 67.95 | 64.83 |
| Os01t0103100-01 | Rice | plasma membrane | 60.9 | 62.71 |
| EES19057 | Sorghum | plastid | 24.84 | 62.0 |
| AT2G26690.1 | Thale cress | plasma membrane | 32.85 | 35.53 |
| AT1G12110.1 | Thale cress | plasma membrane | 32.21 | 34.07 |
| AT3G21670.1 | Thale cress | plasma membrane | 31.25 | 33.05 |
| AT1G33440.1 | Thale cress | plasma membrane | 31.25 | 32.45 |
| AT1G59740.1 | Thale cress | plasma membrane | 30.13 | 31.81 |
| AT1G69850.1 | Thale cress | plasma membrane | 29.65 | 31.62 |
| AT3G25260.1 | Thale cress | plasma membrane | 25.48 | 30.87 |
| AT1G27040.1 | Thale cress | plasma membrane | 28.04 | 30.86 |
| AT3G25280.1 | Thale cress | plasma membrane | 25.0 | 29.94 |
| AT5G62730.1 | Thale cress | plasma membrane | 27.24 | 28.86 |
Protein Annotations
| Gene3D:1.20.1250.20 | MapMan:24.2.2.9 | EntrezGene:831181 | ProteinID:AED91890.1 | ArrayExpress:AT5G13400 | EnsemblPlantsGene:AT5G13400 |
| RefSeq:AT5G13400 | TAIR:AT5G13400 | RefSeq:AT5G13400-TAIR-G | EnsemblPlants:AT5G13400.1 | TAIR:AT5G13400.1 | EMBL:AY072338 |
| EMBL:AY128754 | Unigene:At.69699 | ProteinID:CAB87147.1 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 |
| GO:GO:0006810 | GO:GO:0006857 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0022857 |
| GO:GO:0055085 | InterPro:IPR020846 | InterPro:MFS_dom | InterPro:MFS_trans_sf | RefSeq:NP_196844.1 | PFAM:PF00854 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | InterPro:POT_fam |
| ScanProsite:PS01022 | PANTHER:PTHR11654 | PANTHER:PTHR11654:SF112 | InterPro:PTR2_symporter_CS | UniProt:Q9LYR6 | SUPFAM:SSF103473 |
| TMHMM:TMhelix | UniParc:UPI00000AA638 | SEG:seg | : | : | : |
Description
NPF6.1Protein NRT1/ PTR FAMILY 6.1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LYR6]
Coordinates
chr5:-:4296688..4299264
Molecular Weight (calculated)
69079.2 Da
IEP (calculated)
8.185
GRAVY (calculated)
0.349
Length
624 amino acids
Sequence
(BLAST)
(BLAST)
001: MVASEIKSPV SVPETPGSSS VHHRKQLSVF FIESDNRRLA LGRGYTGGTT PVNIHGKPIA NLSKTGGWIA AFFIFGNEMA ERMAYFGLSV NMVAFMFYVM
101: HRPFESSSNA VNNFLGISQA SSVLGGFLAD AYLGRYWTIA IFTTMYLVGL IGITLGASLK MFVPDQSNCG QLSLLLGNCE EAKSWQMLYL YTVLYITGFG
201: AAGIRPCVSS FGADQFDEKS KDYKTHLDRF FNFFYLSVTL GAIIAFTLVV YVQMELGWGM AFGTLAVAMG ISNALFFAGT PLYRHRLPGG SPLTRVAQVL
301: VAAFRKRNAA FTSSEFIGLY EVPGLKSAIN GSRKIPHSND FIWLDKAALE LKEDGLEPSP WKLCTVTQVE EVKILIRLIP IPTCTIMLSL VLTEYLTLSV
401: QQAYTLNTHI QHLKLPVTCM PVFPGLSIFL ILSLYYSVFV PITRRITGNP HGASQLQRVG IGLAVSIISV AWAGLFENYR RHYAIQNGFE FNFLTQMPDL
501: TAYWLLIQYC LIGIAEVFCI VGLLEFLYEE APDAMKSIGS AYAALAGGLG CFAATILNNI VKAATRDSDG KSWLSQNINT GRFDCLYWLL TLLSFLNFCV
601: FLWSAHRYKY RAIESEEDKS SAVL
101: HRPFESSSNA VNNFLGISQA SSVLGGFLAD AYLGRYWTIA IFTTMYLVGL IGITLGASLK MFVPDQSNCG QLSLLLGNCE EAKSWQMLYL YTVLYITGFG
201: AAGIRPCVSS FGADQFDEKS KDYKTHLDRF FNFFYLSVTL GAIIAFTLVV YVQMELGWGM AFGTLAVAMG ISNALFFAGT PLYRHRLPGG SPLTRVAQVL
301: VAAFRKRNAA FTSSEFIGLY EVPGLKSAIN GSRKIPHSND FIWLDKAALE LKEDGLEPSP WKLCTVTQVE EVKILIRLIP IPTCTIMLSL VLTEYLTLSV
401: QQAYTLNTHI QHLKLPVTCM PVFPGLSIFL ILSLYYSVFV PITRRITGNP HGASQLQRVG IGLAVSIISV AWAGLFENYR RHYAIQNGFE FNFLTQMPDL
501: TAYWLLIQYC LIGIAEVFCI VGLLEFLYEE APDAMKSIGS AYAALAGGLG CFAATILNNI VKAATRDSDG KSWLSQNINT GRFDCLYWLL TLLSFLNFCV
601: FLWSAHRYKY RAIESEEDKS SAVL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.