Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- plasma membrane 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra013222.1-P | Field mustard | plasma membrane | 79.81 | 79.81 |
| CDY52284 | Canola | plasma membrane | 79.61 | 79.61 |
| Bra013221.1-P | Field mustard | plasma membrane | 79.61 | 79.46 |
| CDY52286 | Canola | plasma membrane | 79.61 | 79.46 |
| CDY15100 | Canola | plasma membrane | 77.09 | 67.98 |
| AT3G25280.1 | Thale cress | plasma membrane | 66.02 | 65.26 |
| AT1G27040.1 | Thale cress | plasma membrane | 41.75 | 37.92 |
| AT1G69850.1 | Thale cress | plasma membrane | 41.16 | 36.24 |
| AT5G62730.1 | Thale cress | plasma membrane | 40.58 | 35.48 |
| AT1G59740.1 | Thale cress | plasma membrane | 38.45 | 33.5 |
| AT1G33440.1 | Thale cress | plasma membrane | 38.45 | 32.95 |
| AT2G26690.1 | Thale cress | plasma membrane | 34.95 | 31.2 |
| AT1G12110.1 | Thale cress | plasma membrane | 35.53 | 31.02 |
| AT3G21670.1 | Thale cress | plasma membrane | 34.76 | 30.34 |
| AT5G13400.1 | Thale cress | plasma membrane | 30.87 | 25.48 |
Protein Annotations
| Gene3D:1.20.1250.20 | MapMan:11.1.4.1 | MapMan:24.2.2.9 | EntrezGene:822120 | ProteinID:AEE77001.1 | EMBL:AK227752 |
| ArrayExpress:AT3G25260 | EnsemblPlantsGene:AT3G25260 | RefSeq:AT3G25260 | TAIR:AT3G25260 | RefSeq:AT3G25260-TAIR-G | EnsemblPlants:AT3G25260.1 |
| TAIR:AT3G25260.1 | Unigene:At.21656 | ProteinID:BAB02085.1 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 |
| GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0022857 | GO:GO:0055085 |
| InterPro:IPR020846 | InterPro:MFS_dom | InterPro:MFS_trans_sf | RefSeq:NP_189163.1 | PFAM:PF00854 | PO:PO:0001185 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009009 | PO:PO:0009046 | InterPro:POT_fam | PANTHER:PTHR11654 |
| PANTHER:PTHR11654:SF165 | UniProt:Q9LSF0 | SUPFAM:SSF103473 | TMHMM:TMhelix | UniParc:UPI00000AB883 | SEG:seg |
Description
NPF4.1Protein NRT1/ PTR FAMILY 4.1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSF0]
Coordinates
chr3:+:9199438..9202000
Molecular Weight (calculated)
57164.2 Da
IEP (calculated)
9.696
GRAVY (calculated)
0.362
Length
515 amino acids
Sequence
(BLAST)
(BLAST)
001: MQIEMEEKFE DWRGKEAISG KHGGIKAAFI ACVVETMENM VFLACSTNFM MYFTKSMNYS TPKAATMVTN FVGTSFLLTI FGGFVADSFL TRFAAFVLFG
101: SIELLGLIML TLQAHITKLQ PQGGKKPSTP QSTVLFTGLY AIAIGVGGVK GSLPAHGGDQ IGTRNQRLIS GFFNWYFFSV CLGGFLAVTL MVWIEENIGW
201: SSSFTISTAV LASAIFVFVA GCPMYRFKRP AGSPLTRIVN VFVSAARNRN RFVTDAEVVT QNHNSTDKSI HHNKFKFLNK AKLNNKISAT QVEETRTFLA
301: LLPIFGSTII MNCCVAQMGT FSVQQGMVTN RKLSRSFEIP VASLNAIPLL CMLSSLALYE LFGKRILSNS ERSSSFNLKR IGYGLALTSI SMAVAAIVEV
401: KRKHEAVHNN IKISVFWLEL QFVMLSLSDM LTVGGMLEFF FRESPASMRS MSTALGWCST AMGFFLSSVL VEVVNGITGW LRDDLNESRL ELFYLVLCVL
501: NTLNLFNYIF WAKRY
101: SIELLGLIML TLQAHITKLQ PQGGKKPSTP QSTVLFTGLY AIAIGVGGVK GSLPAHGGDQ IGTRNQRLIS GFFNWYFFSV CLGGFLAVTL MVWIEENIGW
201: SSSFTISTAV LASAIFVFVA GCPMYRFKRP AGSPLTRIVN VFVSAARNRN RFVTDAEVVT QNHNSTDKSI HHNKFKFLNK AKLNNKISAT QVEETRTFLA
301: LLPIFGSTII MNCCVAQMGT FSVQQGMVTN RKLSRSFEIP VASLNAIPLL CMLSSLALYE LFGKRILSNS ERSSSFNLKR IGYGLALTSI SMAVAAIVEV
401: KRKHEAVHNN IKISVFWLEL QFVMLSLSDM LTVGGMLEFF FRESPASMRS MSTALGWCST AMGFFLSSVL VEVVNGITGW LRDDLNESRL ELFYLVLCVL
501: NTLNLFNYIF WAKRY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.