Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- cytosol 1
- plasma membrane 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY04575 | Canola | plasma membrane | 74.09 | 74.52 |
| CDY15763 | Canola | plasma membrane | 69.87 | 74.44 |
| Bra011937.1-P | Field mustard | plasma membrane | 73.9 | 74.32 |
| AT3G25260.1 | Thale cress | plasma membrane | 65.26 | 66.02 |
| AT1G27040.1 | Thale cress | plasma membrane | 42.42 | 38.98 |
| AT1G69850.1 | Thale cress | plasma membrane | 41.46 | 36.92 |
| AT5G62730.1 | Thale cress | plasma membrane | 40.5 | 35.82 |
| AT1G59740.1 | Thale cress | plasma membrane | 38.0 | 33.5 |
| AT1G33440.1 | Thale cress | plasma membrane | 37.43 | 32.45 |
| AT1G12110.1 | Thale cress | plasma membrane | 35.89 | 31.69 |
| AT2G26690.1 | Thale cress | plasma membrane | 34.74 | 31.37 |
| AT3G21670.1 | Thale cress | plasma membrane | 32.82 | 28.98 |
| AT5G13400.1 | Thale cress | plasma membrane | 29.94 | 25.0 |
Protein Annotations
| Gene3D:1.20.1250.20 | MapMan:24.2.2.9 | EntrezGene:822122 | ProteinID:AEE77004.1 | ArrayExpress:AT3G25280 | EnsemblPlantsGene:AT3G25280 |
| RefSeq:AT3G25280 | TAIR:AT3G25280 | RefSeq:AT3G25280-TAIR-G | EnsemblPlants:AT3G25280.1 | TAIR:AT3G25280.1 | Unigene:At.53488 |
| ProteinID:BAB02087.1 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0022857 | GO:GO:0055085 | InterPro:MFS_trans_sf | RefSeq:NP_189165.1 |
| PFAM:PF00854 | InterPro:POT_fam | PANTHER:PTHR11654 | PANTHER:PTHR11654:SF165 | UniProt:Q9LSE8 | SUPFAM:SSF103473 |
| TMHMM:TMhelix | UniParc:UPI000004877C | SEG:seg | : | : | : |
Description
NPF4.2Protein NRT1/ PTR FAMILY 4.2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSE8]
Coordinates
chr3:+:9206183..9208036
Molecular Weight (calculated)
58356.0 Da
IEP (calculated)
9.297
GRAVY (calculated)
0.319
Length
521 amino acids
Sequence
(BLAST)
(BLAST)
001: MENDMEEKFE DWKGKEAIPG KHGGIRAASI VCVVVMMENI VFIANGFNFV KYFMGSMHYT PATAANMVTN FMGTSFLLTL FGGFIADSFV THFTTFIVFC
101: CIELMGLILL TFQAHNPKLL PEKDKTPSTL QSAILFTGLY AMAIGTGGLK ASLPSHGGDQ IDRRNPRLIS RFFDWLYFSI CSGCLLAVTV VLWIEEKKGW
201: IWSFNISVGI LATALCIFTV GLPFYRFKRP NGSPLKKIAI VIISAARNRN KSDLDEEMMR GLISIYKNNS HNKLKWIDKA TLNKNISETE VEETRTFLGL
301: LPIFGSTIVM SCCVAQLSTF SAQQGMLMNK KLFHSFEIPV PSLTAIPLIF MLLSIPLYEF FGKKISSGNN NRSSSFNLKR IGLGLALSSV SMAVSAIVEA
401: KRKHEVVHNN FRISVLWLVF QYLMLSVSDM LTLGGMLEFF YREAPSNMKS ISTALGWCST ALGFFLSTTL VEVTNAVTGR LGHQWLGGED LNKTRLELFY
501: VLLCVLNTLN LLNYIFWAKR Y
101: CIELMGLILL TFQAHNPKLL PEKDKTPSTL QSAILFTGLY AMAIGTGGLK ASLPSHGGDQ IDRRNPRLIS RFFDWLYFSI CSGCLLAVTV VLWIEEKKGW
201: IWSFNISVGI LATALCIFTV GLPFYRFKRP NGSPLKKIAI VIISAARNRN KSDLDEEMMR GLISIYKNNS HNKLKWIDKA TLNKNISETE VEETRTFLGL
301: LPIFGSTIVM SCCVAQLSTF SAQQGMLMNK KLFHSFEIPV PSLTAIPLIF MLLSIPLYEF FGKKISSGNN NRSSSFNLKR IGLGLALSSV SMAVSAIVEA
401: KRKHEVVHNN FRISVLWLVF QYLMLSVSDM LTLGGMLEFF YREAPSNMKS ISTALGWCST ALGFFLSTTL VEVTNAVTGR LGHQWLGGED LNKTRLELFY
501: VLLCVLNTLN LLNYIFWAKR Y
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.