Factsheet for Bra011937.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 4
vacuole 2
extracellular 1
endoplasmic reticulum 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	plasma membrane
Plant-mPloc:	vacuole
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY04575	Canola	plasma membrane	98.65	98.65
AT3G25280.1	Thale cress	plasma membrane	74.32	73.9
Bra013221.1-P	Field mustard	plasma membrane	64.48	64.73
Bra013222.1-P	Field mustard	plasma membrane	64.09	64.47
Bra012431.1-P	Field mustard	plasma membrane	21.24	43.14
Bra010117.1-P	Field mustard	plasma membrane	39.0	36.4
Bra019744.1-P	Field mustard	plasma membrane	18.73	36.19
Bra016789.1-P	Field mustard	plasma membrane	37.26	32.71
Bra026991.1-P	Field mustard	plasma membrane	36.49	32.09
Bra027836.1-P	Field mustard	plasma membrane	37.07	31.84
Bra028002.1-P	Field mustard	peroxisome	36.49	31.5
Bra035429.1-P	Field mustard	plasma membrane	35.91	31.31
Bra031295.1-P	Field mustard	plasma membrane	33.59	29.79
Bra023868.1-P	Field mustard	plasma membrane	33.2	29.76
Bra012052.1-P	Field mustard	plasma membrane	27.61	27.45
Bra023408.1-P	Field mustard	plastid	29.54	24.6

Protein Annotations

Gene3D:1.20.1250.20	MapMan:11.1.4.1	MapMan:24.2.2.9	EnsemblPlantsGene:Bra011937	EnsemblPlants:Bra011937.1	EnsemblPlants:Bra011937.1-P
GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020
GO:GO:0016021	GO:GO:0022857	GO:GO:0055085	UniProt:M4D629	InterPro:MFS_trans_sf	PFAM:PF00854
InterPro:POT_fam	PFscan:PS51257	PANTHER:PTHR11654	PANTHER:PTHR11654:SF165	SUPFAM:SSF103473	TMHMM:TMhelix
UniParc:UPI00025412E0	SEG:seg	:	:	:	:

Description

AT3G25280 (E=3e-196) | proton-dependent oligopeptide transport (POT) family protein

Coordinates

chrA07:-:11155568..11157365

Molecular Weight (calculated)

57649.6 Da

IEP (calculated)

6.256

GRAVY (calculated)

0.455

Length

518 amino acids

Sequence
(BLAST)

001: MKNEIEERFE DWKGREAIPG KHGGIGPAAI ACVVEVMENI VFVANGFNFV EYFMSSMHYS PATAANMVTN FMGTTFLLTL LGGFIADSFL TNFTTFIIFC
101: CLELMGLILL TFQSYSPKLQ PESDKTPSTL QATILFTGLY AMAFGAGGIK ASLPTHGGDQ LDRGNPRLIS RFFNWFYFSI CCGSILAVTI VVSIEESKGW
201: FWSFTISAGT LALALFIFMA GLPFYRFKSP TGSSLTRITK VIVSAARNRN KTDLDEEMIQ SLISTDEGIS HTKLKCLDKA MLNKNISAIE VAETRTFLGL
301: LPIFFSTIAM NCCLAQLSTF SVQQGMIMDR KLFGSFEIPV PSLVAIPLLL VILSSPLYDY FGKRISLDIS PSFNLYRIRL GLALSSFSMV IAAIVETTRK
401: YVAVHYDFKI SVLWLMVQYL LLTVADTLAF GGMLDFFYRE APSNMKSMST ALGWCSTAFG FFLSTALVEV TNTITGWLGH QWLGGEDLNE TSLELFYVVL
501: FVLNTLNLLN YNFWMKGY

Best Arabidopsis Sequence Match ( AT3G25280.1 )
(BLAST)

001: MENDMEEKFE DWKGKEAIPG KHGGIRAASI VCVVVMMENI VFIANGFNFV KYFMGSMHYT PATAANMVTN FMGTSFLLTL FGGFIADSFV THFTTFIVFC
101: CIELMGLILL TFQAHNPKLL PEKDKTPSTL QSAILFTGLY AMAIGTGGLK ASLPSHGGDQ IDRRNPRLIS RFFDWLYFSI CSGCLLAVTV VLWIEEKKGW
201: IWSFNISVGI LATALCIFTV GLPFYRFKRP NGSPLKKIAI VIISAARNRN KSDLDEEMMR GLISIYKNNS HNKLKWIDKA TLNKNISETE VEETRTFLGL
301: LPIFGSTIVM SCCVAQLSTF SAQQGMLMNK KLFHSFEIPV PSLTAIPLIF MLLSIPLYEF FGKKISSGNN NRSSSFNLKR IGLGLALSSV SMAVSAIVEA
401: KRKHEVVHNN FRISVLWLVF QYLMLSVSDM LTLGGMLEFF YREAPSNMKS ISTALGWCST ALGFFLSTTL VEVTNAVTGR LGHQWLGGED LNKTRLELFY
501: VLLCVLNTLN LLNYIFWAKR Y

Arabidopsis Description

NPF4.2Protein NRT1/ PTR FAMILY 4.2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSE8]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.